Myct1 (MYC target 1) - Rat Genome Database

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Gene: Myct1 (MYC target 1) Heterocephalus glaber
Analyze
Symbol: Myct1
Name: MYC target 1
RGD ID: 18917122
Description: INVOLVED IN hematopoietic stem cell homeostasis (ortholog); ASSOCIATED WITH autosomal recessive spinocerebellar ataxia 8 (ortholog); chromosome 6q24-q25 deletion syndrome (ortholog); genetic disease (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog); nuclear body (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: myc target protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247855,543,855 - 5,570,774 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247855,543,867 - 5,570,727 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Myct1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247855,543,855 - 5,570,774 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247855,543,867 - 5,570,727 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
MYCT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386152,697,897 - 152,747,181 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6152,697,897 - 152,724,569 (+)EnsemblGRCh38hg38GRCh38
GRCh376153,019,032 - 153,049,320 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366153,060,723 - 153,087,410 (+)NCBINCBI36Build 36hg18NCBI36
Build 346153,111,151 - 153,135,872NCBI
Celera6153,752,735 - 153,779,422 (+)NCBICelera
Cytogenetic Map6q25.2NCBI
HuRef6150,582,149 - 150,608,836 (+)NCBIHuRef
CHM1_16153,282,995 - 153,309,668 (+)NCBICHM1_1
T2T-CHM13v2.06153,899,213 - 153,948,502 (+)NCBIT2T-CHM13v2.0
Myct1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39105,543,728 - 5,556,789 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl105,543,775 - 5,556,904 (+)EnsemblGRCm39 Ensembl
GRCm38105,593,728 - 5,606,789 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl105,593,775 - 5,606,904 (+)EnsemblGRCm38mm10GRCm38
MGSCv37104,739,752 - 4,752,813 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36104,740,985 - 4,752,760 (-)NCBIMGSCv36mm8
Celera105,530,674 - 5,543,682 (+)NCBICelera
Cytogenetic Map10A1NCBI
cM Map101.99NCBI
Myct1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8144,423,478 - 44,434,751 (+)NCBIGRCr8
mRatBN7.2142,018,137 - 42,029,410 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl142,018,137 - 42,029,410 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx142,552,281 - 42,563,568 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0148,539,477 - 48,550,764 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0142,627,778 - 42,639,064 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0142,121,572 - 42,132,131 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl142,121,636 - 42,131,547 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0143,450,903 - 43,461,462 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4136,314,335 - 36,325,608 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1136,317,334 - 36,327,965 (+)NCBI
Celera137,696,838 - 37,707,781 (+)NCBICelera
Cytogenetic Map1q11NCBI
Myct1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554399,065,574 - 9,086,539 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554399,065,983 - 9,086,491 (-)NCBIChiLan1.0ChiLan1.0
MYCT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25172,722,140 - 172,745,154 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16170,614,972 - 170,637,991 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06150,515,673 - 150,538,481 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16155,205,805 - 155,228,622 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6155,205,805 - 155,228,622 (+)Ensemblpanpan1.1panPan2
MYCT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1142,886,997 - 42,908,813 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl142,830,099 - 42,925,680 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha143,725,891 - 43,747,707 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0143,071,520 - 43,093,369 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl143,049,590 - 43,093,349 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1142,943,635 - 42,965,448 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0142,807,264 - 42,829,075 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0143,295,123 - 43,316,929 (+)NCBIUU_Cfam_GSD_1.0
Myct1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946138,119,917 - 138,148,617 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364895,371,934 - 5,400,229 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364895,371,910 - 5,400,610 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MYCT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl113,651,399 - 13,667,284 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1113,651,397 - 13,667,210 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2115,946,514 - 15,970,725 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MYCT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11380,167,974 - 80,192,976 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1380,168,447 - 80,193,110 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604052,499,529 - 52,523,359 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000005489   ⟹   ENSHGLP00000005419
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247855,543,855 - 5,570,774 (-)Ensembl
RefSeq Acc Id: XM_004856862   ⟹   XP_004856919
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247855,543,867 - 5,570,727 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004856919 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000005419
Reference Protein Sequences
RefSeq Acc Id: XP_004856919   ⟸   XM_004856862
RefSeq Acc Id: ENSHGLP00000005419   ⟸   ENSHGLT00000005489


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000003966 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000005489 ENTREZGENE
NCBI Gene Myct1 ENTREZGENE