Cblif (cobalamin binding intrinsic factor) - Rat Genome Database

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Gene: Cblif (cobalamin binding intrinsic factor) Heterocephalus glaber
Analyze
Symbol: Cblif
Name: cobalamin binding intrinsic factor
RGD ID: 18916707
Description: ENCODES a protein that exhibits cobalamin binding (ortholog); INVOLVED IN cobalamin transport (inferred); cobalt ion transport (inferred); ASSOCIATED WITH congenital intrinsic factor deficiency (ortholog); gastric ulcer (ortholog); gastritis (ortholog); FOUND IN extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: gastric intrinsic factor; Gif
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248641,028,982 - 1,040,731 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cblif
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248641,028,982 - 1,040,731 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CBLIF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381159,829,273 - 59,845,499 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1159,829,273 - 59,845,499 (-)EnsemblGRCh38hg38GRCh38
GRCh371159,596,746 - 59,612,972 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361159,353,322 - 59,369,550 (-)NCBINCBI36Build 36hg18NCBI36
Build 341159,353,323 - 59,369,550NCBI
Celera1156,959,492 - 56,975,732 (-)NCBICelera
Cytogenetic Map11q12.1NCBI
HuRef1155,944,132 - 55,960,372 (-)NCBIHuRef
CHM1_11159,462,735 - 59,478,963 (-)NCBICHM1_1
T2T-CHM13v2.01159,780,568 - 59,796,806 (-)NCBIT2T-CHM13v2.0
Cblif
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391911,724,907 - 11,740,811 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1911,724,918 - 11,740,811 (+)EnsemblGRCm39 Ensembl
GRCm381911,747,543 - 11,763,447 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1911,747,554 - 11,763,447 (+)EnsemblGRCm38mm10GRCm38
MGSCv371911,822,049 - 11,837,937 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361911,814,604 - 11,830,492 (+)NCBIMGSCv36mm8
Celera1912,421,676 - 12,437,553 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map198.51NCBI
Cblif
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81218,030,756 - 218,045,004 (+)NCBIGRCr8
mRatBN7.21208,605,983 - 208,620,231 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1208,605,983 - 208,620,344 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1216,980,694 - 216,994,932 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01223,974,554 - 223,988,811 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01216,735,131 - 216,749,369 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01228,118,048 - 228,132,296 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1228,118,048 - 228,132,404 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01235,185,900 - 235,200,148 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41214,519,329 - 214,533,578 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11214,677,758 - 214,692,008 (+)NCBI
Celera1206,076,631 - 206,090,861 (+)NCBICelera
Cytogenetic Map1q43NCBI
Cblif
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555114,231,466 - 4,251,975 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555114,234,470 - 4,251,583 (-)NCBIChiLan1.0ChiLan1.0
CBLIF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2960,958,637 - 60,974,926 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11162,002,300 - 62,018,611 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01155,052,839 - 55,069,113 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11158,500,878 - 58,517,094 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1158,500,878 - 58,517,094 (-)Ensemblpanpan1.1panPan2
CBLIF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12150,334,769 - 50,350,598 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2150,334,769 - 50,350,598 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2149,776,075 - 49,791,632 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02151,507,892 - 51,523,880 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2151,507,892 - 51,523,880 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12150,555,189 - 50,571,174 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02150,652,926 - 50,668,444 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02151,277,695 - 51,293,212 (-)NCBIUU_Cfam_GSD_1.0
Cblif
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494712,806,500 - 12,819,735 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365812,920,355 - 2,933,403 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365812,919,793 - 2,933,743 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CBLIF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl211,655,767 - 11,674,302 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1211,655,726 - 11,674,357 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2211,108,689 - 11,126,319 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CBLIF
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1113,833,762 - 13,849,727 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl113,834,330 - 13,849,516 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038111,166,368 - 111,181,766 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_004869713   ⟹   XP_004869770
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248641,028,982 - 1,040,731 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004869770 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHA98776 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000014649
  ENSHGLP00100013758
Reference Protein Sequences
RefSeq Acc Id: XP_004869770   ⟸   XM_004869713
- UniProtKB: G5AP16 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000010486 UniProtKB/TrEMBL
  ENSHGLG00100010172 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000014794 UniProtKB/TrEMBL
  ENSHGLT00100013913 UniProtKB/TrEMBL
Gene3D-CATH 1.50.10.20 UniProtKB/TrEMBL
  2.170.130.30 UniProtKB/TrEMBL
InterPro Cbl-bd_prot UniProtKB/TrEMBL
  DUF4430 UniProtKB/TrEMBL
NCBI Gene Cblif ENTREZGENE
PANTHER COBALAMIN BINDING INTRINSIC FACTOR UniProtKB/TrEMBL
  TRANSCOBALAMIN-1/GASTRIC INTRINSIC FACTOR UniProtKB/TrEMBL
Pfam Cobalamin_bind UniProtKB/TrEMBL
  DUF4430 UniProtKB/TrEMBL
UniProt G5AP16 ENTREZGENE, UniProtKB/TrEMBL