Islr (immunoglobulin superfamily containing leucine rich repeat) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Islr (immunoglobulin superfamily containing leucine rich repeat) Heterocephalus glaber
Analyze
Symbol: Islr
Name: immunoglobulin superfamily containing leucine rich repeat
RGD ID: 18916628
Description: ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Immunoglobulin superfamily containing leucine-rich repeat protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624781414,918 - 417,947 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:21993625   PMID:22301074  


Genomics

Comparative Map Data
Islr
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624781414,918 - 417,947 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ISLR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381574,173,710 - 74,176,871 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1574,173,710 - 74,176,872 (+)EnsemblGRCh38hg38GRCh38
GRCh371574,466,051 - 74,469,212 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361572,253,140 - 72,256,265 (+)NCBINCBI36Build 36hg18NCBI36
Celera1551,413,268 - 51,416,393 (+)NCBICelera
Cytogenetic Map15q24.1NCBI
HuRef1551,259,758 - 51,262,883 (+)NCBIHuRef
CHM1_11574,584,282 - 74,587,407 (+)NCBICHM1_1
T2T-CHM13v2.01572,039,630 - 72,042,791 (+)NCBIT2T-CHM13v2.0
Islr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39958,063,547 - 58,066,563 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl958,063,551 - 58,111,589 (-)EnsemblGRCm39 Ensembl
GRCm38958,156,246 - 58,159,236 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl958,156,268 - 58,204,306 (-)EnsemblGRCm38mm10GRCm38
MGSCv37958,004,076 - 58,006,949 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36957,954,406 - 57,957,279 (-)NCBIMGSCv36mm8
Celera955,390,484 - 55,393,393 (-)NCBICelera
Cytogenetic Map9BNCBI
cM Map931.63NCBI
Islr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8867,467,013 - 67,469,989 (-)NCBIGRCr8
mRatBN7.2858,571,155 - 58,574,128 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl858,570,777 - 58,574,130 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx864,101,715 - 64,103,960 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0862,379,274 - 62,381,519 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0860,243,841 - 60,246,086 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0862,946,732 - 62,949,675 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl862,946,732 - 62,948,720 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0862,722,822 - 62,725,747 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera858,035,013 - 58,037,258 (-)NCBICelera
Cytogenetic Map8q24NCBI
Islr
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554503,604,116 - 3,607,126 (-)NCBIChiLan1.0ChiLan1.0
ISLR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21663,397,405 - 63,400,652 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11567,561,067 - 67,564,247 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01553,112,206 - 53,115,367 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11572,735,143 - 72,738,344 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1572,736,331 - 72,737,617 (+)Ensemblpanpan1.1panPan2
ISLR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13037,326,212 - 37,329,352 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3037,327,228 - 37,328,616 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3037,261,848 - 37,264,976 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03037,533,286 - 37,536,414 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3037,533,319 - 37,536,409 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13037,485,414 - 37,488,542 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03037,511,327 - 37,514,455 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03037,766,892 - 37,770,020 (+)NCBIUU_Cfam_GSD_1.0
Islr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640115,370,510 - 115,373,763 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647133,218,805 - 33,221,785 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647133,218,841 - 33,221,826 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ISLR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl759,349,675 - 59,352,839 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1759,349,674 - 59,352,936 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2763,967,908 - 63,971,170 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ISLR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1269,313,819 - 9,316,785 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl269,314,572 - 9,315,858 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048132,306,221 - 132,309,434 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_004855475   ⟹   XP_004855532
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624781414,918 - 417,947 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004855532 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB11872 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004855532   ⟸   XM_004855475


Additional Information

Database Acc Id Source(s)
NCBI Gene Islr ENTREZGENE