Rbm12b (RNA binding motif protein 12B) - Rat Genome Database

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Gene: Rbm12b (RNA binding motif protein 12B) Heterocephalus glaber
Analyze
Symbol: Rbm12b
Name: RNA binding motif protein 12B
RGD ID: 18916569
Description: ENCODES a protein that exhibits nucleic acid binding (inferred); RNA binding (inferred); ASSOCIATED WITH genetic disease (ortholog); myoepithelioma (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: RNA-binding protein 12B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247631,205,130 - 1,212,409 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624763726,665 - 1,219,697 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Rbm12b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247631,205,130 - 1,212,409 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624763726,665 - 1,219,697 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
RBM12B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38893,728,155 - 93,741,009 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl893,728,155 - 93,741,017 (-)EnsemblGRCh38hg38GRCh38
GRCh37894,740,383 - 94,753,237 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36894,812,904 - 94,822,400 (-)NCBINCBI36Build 36hg18NCBI36
Celera890,929,789 - 90,939,285 (-)NCBICelera
Cytogenetic Map8q22.1NCBI
HuRef889,951,263 - 89,960,755 (-)NCBIHuRef
CHM1_1894,784,018 - 94,793,512 (-)NCBICHM1_1
T2T-CHM13v2.0894,853,161 - 94,866,033 (-)NCBIT2T-CHM13v2.0
Rbm12b1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39412,138,957 - 12,148,922 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl412,140,264 - 12,146,731 (+)EnsemblGRCm39 Ensembl
GRCm38412,138,957 - 12,148,922 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl412,140,264 - 12,146,731 (+)EnsemblGRCm38mm10GRCm38
MGSCv37412,067,264 - 12,073,892 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36412,067,464 - 12,073,878 (+)NCBIMGSCv36mm8
Celera328,599,613 - 28,600,101 (+)NCBICelera
Cytogenetic Map4A1NCBI
cM Map45.58NCBI
Rbm12b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8530,394,756 - 30,507,428 (+)NCBIGRCr8
mRatBN7.2525,597,405 - 25,610,324 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl525,590,493 - 25,611,245 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0525,247,990 - 25,257,678 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl525,253,010 - 25,255,938 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0529,962,425 - 29,970,746 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4526,382,356 - 26,385,470 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1526,381,763 - 26,384,888 (+)NCBI
Celera524,920,046 - 24,928,196 (+)NCBICelera
Cytogenetic Map5q13NCBI
Rbm12b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541710,083,944 - 10,086,802 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541710,067,672 - 10,097,381 (-)NCBIChiLan1.0ChiLan1.0
RBM12B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27111,065,895 - 111,074,128 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1886,601,667 - 86,611,299 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0890,355,185 - 90,364,933 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1892,297,760 - 92,311,017 (-)NCBIpanpan1.1PanPan1.1panPan2
RBM12B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12938,631,313 - 38,641,998 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2938,634,742 - 38,637,723 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2938,792,185 - 38,804,225 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02938,834,294 - 38,846,338 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2938,839,007 - 38,841,988 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12938,848,170 - 38,860,213 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02938,842,743 - 38,854,785 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02939,284,239 - 39,296,282 (-)NCBIUU_Cfam_GSD_1.0
Rbm12b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530340,905,062 - 40,920,952 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365446,872,336 - 6,875,155 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365446,872,032 - 6,887,813 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBM12B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl442,946,778 - 42,958,842 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1442,946,857 - 42,971,191 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2446,362,628 - 46,419,987 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RBM12B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1888,704,297 - 88,712,569 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl888,704,951 - 88,707,956 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603952,136,722 - 52,149,155 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013074134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013074135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013074136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013074137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013074138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021262628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021262629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021262630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021262631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002396790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002396791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002396792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002396793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002396794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002396795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002396796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002396797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002396799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002396800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002396801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01043695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01043696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01043697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01043698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01043699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01043700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01043701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01043702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01043703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01043704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01043705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01043706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01043707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01043708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01043709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01043710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01043711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01043712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01043713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01043714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH173292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000012813   ⟹   ENSHGLP00000012676
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247631,205,130 - 1,212,409 (-)Ensembl
RefSeq Acc Id: XM_013074134   ⟹   XP_012929588
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247631,203,637 - 1,212,257 (-)NCBI
RefSeq Acc Id: XM_013074135   ⟹   XP_012929589
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247631,203,637 - 1,219,697 (-)NCBI
RefSeq Acc Id: XM_013074136   ⟹   XP_012929590
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247631,203,637 - 1,212,436 (-)NCBI
RefSeq Acc Id: XM_013074137   ⟹   XP_012929591
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247631,203,637 - 1,212,436 (-)NCBI
RefSeq Acc Id: XM_013074138   ⟹   XP_012929592
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247631,203,637 - 1,212,436 (-)NCBI
RefSeq Acc Id: XM_021262628   ⟹   XP_021118287
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247631,203,637 - 1,209,205 (-)NCBI
RefSeq Acc Id: XM_021262629   ⟹   XP_021118288
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247631,203,637 - 1,212,436 (-)NCBI
RefSeq Acc Id: XM_021262630   ⟹   XP_021118289
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247631,203,637 - 1,212,436 (-)NCBI
RefSeq Acc Id: XM_021262631   ⟹   XP_021118290
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247631,203,637 - 1,212,436 (-)NCBI
RefSeq Acc Id: XR_002396790
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624763744,098 - 1,212,649 (-)NCBI
RefSeq Acc Id: XR_002396791
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624763744,098 - 1,212,655 (-)NCBI
RefSeq Acc Id: XR_002396792
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247631,085,559 - 1,212,641 (-)NCBI
RefSeq Acc Id: XR_002396793
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247631,027,956 - 1,212,654 (-)NCBI
RefSeq Acc Id: XR_002396794
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247631,085,557 - 1,212,646 (-)NCBI
RefSeq Acc Id: XR_002396795
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247631,027,956 - 1,212,657 (-)NCBI
RefSeq Acc Id: XR_002396796
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624763744,098 - 1,212,647 (-)NCBI
RefSeq Acc Id: XR_002396797
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624763726,665 - 1,212,652 (-)NCBI
RefSeq Acc Id: XR_002396799
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247631,070,470 - 1,212,650 (-)NCBI
RefSeq Acc Id: XR_002396800
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624763744,098 - 1,212,659 (-)NCBI
RefSeq Acc Id: XR_002396801
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624763744,098 - 1,212,661 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_012929589   ⟸   XM_013074135
- UniProtKB: G5C4D1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021118288   ⟸   XM_021262629
- UniProtKB: G5C4D1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012929591   ⟸   XM_013074137
- UniProtKB: G5C4D1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012929592   ⟸   XM_013074138
- UniProtKB: G5C4D1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021118289   ⟸   XM_021262630
- UniProtKB: G5C4D1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012929590   ⟸   XM_013074136
- UniProtKB: G5C4D1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021118290   ⟸   XM_021262631
- UniProtKB: G5C4D1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012929588   ⟸   XM_013074134
- UniProtKB: G5C4D1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021118287   ⟸   XM_021262628
- UniProtKB: G5C4D1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000012676   ⟸   ENSHGLT00000012813


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000009063 Ensembl, ENTREZGENE
  ENSHGLG00000035676 UniProtKB/TrEMBL
  ENSHGLG00100039524 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000012813 ENTREZGENE
  ENSHGLT00000042802 UniProtKB/TrEMBL
  ENSHGLT00000051628 UniProtKB/TrEMBL
  ENSHGLT00000054027 UniProtKB/TrEMBL
  ENSHGLT00000057134 UniProtKB/TrEMBL
  ENSHGLT00000064302 UniProtKB/TrEMBL
  ENSHGLT00000065335 UniProtKB/TrEMBL
  ENSHGLT00000081290 UniProtKB/TrEMBL
  ENSHGLT00000081696 UniProtKB/TrEMBL
  ENSHGLT00000087019 UniProtKB/TrEMBL
  ENSHGLT00000090053 UniProtKB/TrEMBL
  ENSHGLT00100051920 UniProtKB/TrEMBL
  ENSHGLT00100053144 UniProtKB/TrEMBL
  ENSHGLT00100056891 UniProtKB/TrEMBL
  ENSHGLT00100066024 UniProtKB/TrEMBL
  ENSHGLT00100069363 UniProtKB/TrEMBL
  ENSHGLT00100073571 UniProtKB/TrEMBL
  ENSHGLT00100074253 UniProtKB/TrEMBL
  ENSHGLT00100075149 UniProtKB/TrEMBL
  ENSHGLT00100081441 UniProtKB/TrEMBL
  ENSHGLT00100085118 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RBM12B_RRM2 UniProtKB/TrEMBL
  RRM4_RBM12B UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
KEGG Report hgl:101722668 UniProtKB/TrEMBL
NCBI Gene Rbm12b ENTREZGENE
PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt G5C4D1 ENTREZGENE, UniProtKB/TrEMBL