Sox12 (SRY-box transcription factor 12) - Rat Genome Database

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Gene: Sox12 (SRY-box transcription factor 12) Heterocephalus glaber
Analyze
Symbol: Sox12
Name: SRY-box transcription factor 12
RGD ID: 18916450
Description: ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN positive regulation of regulatory T cell differentiation (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); spinal cord development (ortholog); ASSOCIATED WITH genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN nucleoplasm (ortholog); protein-DNA complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SRY-box 12; transcription factor SOX-12
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247411,428,241 - 1,431,025 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247411,428,233 - 1,432,372 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Sox12
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247411,428,241 - 1,431,025 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247411,428,233 - 1,432,372 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SOX12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3820325,552 - 330,224 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl20325,552 - 330,224 (+)EnsemblGRCh38hg38GRCh38
GRCh3720306,196 - 310,868 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3620254,239 - 258,868 (+)NCBINCBI36Build 36hg18NCBI36
Build 3420254,238 - 258,865NCBI
Celera20401,079 - 405,712 (+)NCBICelera
Cytogenetic Map20p13NCBI
HuRef20257,640 - 262,301 (+)NCBIHuRef
CHM1_120306,210 - 310,867 (+)NCBICHM1_1
T2T-CHM13v2.020368,913 - 373,584 (+)NCBIT2T-CHM13v2.0
Sox12
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392152,235,531 - 152,239,966 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2152,235,531 - 152,239,983 (-)EnsemblGRCm39 Ensembl
GRCm382152,393,611 - 152,398,046 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2152,393,611 - 152,398,063 (-)EnsemblGRCm38mm10GRCm38
MGSCv372152,219,347 - 152,223,782 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362152,085,052 - 152,089,487 (-)NCBIMGSCv36mm8
Celera2158,207,323 - 158,210,866 (-)NCBICelera
Cytogenetic Map2G3NCBI
cM Map274.94NCBI
Sox12
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83161,319,800 - 161,320,819 (-)NCBIGRCr8
mRatBN7.23140,859,499 - 140,860,518 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3140,856,579 - 140,860,975 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3144,764,678 - 144,765,697 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03153,348,524 - 153,349,543 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03151,088,381 - 151,089,400 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03147,864,374 - 147,865,393 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3147,864,374 - 147,865,393 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03154,212,545 - 154,213,564 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43142,714,836 - 142,715,855 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3139,611,156 - 139,612,135 (-)NCBICelera
Cytogenetic Map3q41NCBI
Sox12
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955597225,796 - 229,350 (+)NCBIChiLan1.0ChiLan1.0
SOX12
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2211,414,115 - 1,417,313 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1201,410,937 - 1,413,947 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v020533,901 - 537,106 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.120304,684 - 308,588 (+)NCBIpanpan1.1PanPan1.1panPan2
SOX12
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12420,509,931 - 20,515,013 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2420,513,567 - 20,514,532 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2420,162,908 - 20,167,529 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02421,203,093 - 21,207,714 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2421,206,728 - 21,207,699 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12420,478,417 - 20,483,032 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02420,584,363 - 20,588,979 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02421,015,129 - 21,019,750 (-)NCBIUU_Cfam_GSD_1.0
SOX12
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1734,857,022 - 34,857,960 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11734,855,149 - 34,858,434 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21739,634,817 - 39,638,056 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SOX12
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1235,454,287 - 35,457,481 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl235,454,655 - 35,455,599 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660787,627,423 - 7,631,872 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004840617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01018767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSHGLT00000022407   ⟹   ENSHGLP00000022196
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247411,428,241 - 1,431,025 (+)Ensembl
RefSeq Acc Id: XM_004840617   ⟹   XP_004840674
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247411,428,233 - 1,432,372 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004840674 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000022196
RefSeq Acc Id: XP_004840674   ⟸   XM_004840617
RefSeq Acc Id: ENSHGLP00000022196   ⟸   ENSHGLT00000022407


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000015826 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000022407 ENTREZGENE
NCBI Gene Sox12 ENTREZGENE