Cog8 (component of oligomeric golgi complex 8) - Rat Genome Database

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Gene: Cog8 (component of oligomeric golgi complex 8) Heterocephalus glaber
Analyze
Symbol: Cog8
Name: component of oligomeric golgi complex 8
RGD ID: 18916041
Description: INVOLVED IN glycosylation (ortholog); Golgi organization (ortholog); retrograde transport, vesicle recycling within Golgi (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); congenital disorder of glycosylation (ortholog); congenital disorder of glycosylation type IIh (ortholog); FOUND IN Golgi apparatus (inferred); Golgi membrane (inferred); Golgi transport complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: conserved oligomeric Golgi complex subunit 8
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474617,034,590 - 17,041,288 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474617,034,542 - 17,041,421 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cog8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474617,034,590 - 17,041,288 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474617,034,542 - 17,041,421 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
COG8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381669,326,428 - 69,339,564 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1669,320,140 - 69,339,583 (-)EnsemblGRCh38hg38GRCh38
GRCh371669,360,331 - 69,373,467 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361667,920,025 - 67,931,014 (-)NCBINCBI36Build 36hg18NCBI36
Build 341667,920,024 - 67,931,014NCBI
Celera1653,877,064 - 53,888,066 (-)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1655,240,685 - 55,251,300 (-)NCBIHuRef
CHM1_11670,770,526 - 70,781,542 (-)NCBICHM1_1
T2T-CHM13v2.01675,128,123 - 75,141,258 (-)NCBIT2T-CHM13v2.0
Cog8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398107,775,341 - 107,783,369 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8107,772,921 - 107,783,321 (-)EnsemblGRCm39 Ensembl
GRCm388107,048,709 - 107,056,737 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8107,046,289 - 107,056,689 (-)EnsemblGRCm38mm10GRCm38
MGSCv378109,572,609 - 109,580,637 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368109,935,418 - 109,945,802 (-)NCBIMGSCv36mm8
Celera8111,275,258 - 111,283,291 (-)NCBICelera
Cytogenetic Map8D3NCBI
cM Map853.55NCBI
Cog8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81951,861,376 - 51,872,126 (-)NCBIGRCr8
mRatBN7.21934,951,625 - 34,962,377 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1934,951,627 - 34,962,397 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1941,767,104 - 41,777,856 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01942,420,451 - 42,431,203 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01944,719,737 - 44,730,221 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01939,246,656 - 39,257,406 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1939,246,625 - 39,257,451 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01950,110,028 - 50,121,314 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41936,904,222 - 36,914,972 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11936,908,347 - 36,919,845 (-)NCBI
Celera1934,375,170 - 34,386,011 (-)NCBICelera
Cytogenetic Map19q12NCBI
Cog8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554847,357,066 - 7,363,302 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554847,357,066 - 7,363,239 (+)NCBIChiLan1.0ChiLan1.0
COG8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21878,873,009 - 78,884,033 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11684,784,642 - 84,795,718 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01649,702,875 - 49,713,988 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11669,089,130 - 69,100,128 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1669,089,130 - 69,100,128 (-)Ensemblpanpan1.1panPan2
PanPan1.1 Ensembl1669,089,531 - 69,091,083 (-)Ensemblpanpan1.1panPan2
COG8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1580,316,440 - 80,323,532 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha580,306,754 - 80,315,976 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0580,750,372 - 80,759,598 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl580,750,375 - 80,757,477 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1580,577,519 - 80,586,739 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0580,260,349 - 80,269,577 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0580,899,932 - 80,909,158 (+)NCBIUU_Cfam_GSD_1.0
Cog8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934940,132,913 - 40,143,000 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647519,446,762 - 19,449,013 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0 EnsemblNW_00493647519,449,172 - 19,456,168 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647519,449,007 - 19,456,188 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COG8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl617,645,590 - 17,650,481 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1617,645,544 - 17,652,301 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2616,592,260 - 16,599,145 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103233215
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1558,067,515 - 58,078,567 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl558,076,652 - 58,078,535 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
ChlSab1.1 Ensembl558,067,534 - 58,076,400 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604720,797,295 - 20,810,137 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004842946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01026047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000024175   ⟹   ENSHGLP00000023957
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474617,034,590 - 17,041,288 (+)Ensembl
RefSeq Acc Id: XM_004842946   ⟹   XP_004843003
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474617,034,542 - 17,041,421 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004843003 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000023957
Reference Protein Sequences
RefSeq Acc Id: XP_004843003   ⟸   XM_004842946
- UniProtKB: G5AK46 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000023957   ⟸   ENSHGLT00000024175


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000017078 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000024175 ENTREZGENE
InterPro COG8 UniProtKB/TrEMBL
  COG8_Metazoal_Plant UniProtKB/TrEMBL
  Cullin_repeat-like_dom_sf UniProtKB/TrEMBL
NCBI Gene Cog8 ENTREZGENE
PANTHER CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 8 UniProtKB/TrEMBL
  CONSERVED OLIGOMERIC GOLGI COMPLEX SUBUNIT 8 UniProtKB/TrEMBL
Pfam Dor1 UniProtKB/TrEMBL
PIRSF COG8 UniProtKB/TrEMBL
Superfamily-SCOP Cullin repeat-like UniProtKB/TrEMBL
UniProt G5AK46 ENTREZGENE, UniProtKB/TrEMBL