Snx31 (sorting nexin 31) - Rat Genome Database

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Gene: Snx31 (sorting nexin 31) Heterocephalus glaber
Analyze
Symbol: Snx31
Name: sorting nexin 31
RGD ID: 18915872
Description: ENCODES a protein that exhibits phosphatidylinositol binding (inferred); INVOLVED IN intracellular protein transport (inferred); ASSOCIATED WITH Cohen syndrome (ortholog); genetic disease (ortholog); FOUND IN early endosome (inferred); protein-containing complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Sorting nexin-31
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247637,455,924 - 7,515,155 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247637,455,924 - 7,515,120 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Snx31
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247637,455,924 - 7,515,155 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247637,455,924 - 7,515,120 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SNX31
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388100,572,874 - 100,663,585 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8100,572,889 - 100,663,415 (-)EnsemblGRCh38hg38GRCh38
GRCh378101,585,102 - 101,661,893 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368101,654,299 - 101,731,069 (-)NCBINCBI36Build 36hg18NCBI36
Celera897,770,483 - 97,847,271 (-)NCBICelera
Cytogenetic Map8q22.3NCBI
HuRef896,784,677 - 96,860,804 (-)NCBIHuRef
CHM1_18101,625,996 - 101,702,710 (-)NCBICHM1_1
T2T-CHM13v2.08101,698,913 - 101,789,632 (-)NCBIT2T-CHM13v2.0
Snx31
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391536,504,208 - 36,560,274 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1536,504,208 - 36,555,718 (-)EnsemblGRCm39 Ensembl
GRCm381536,504,062 - 36,560,129 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1536,504,062 - 36,555,573 (-)EnsemblGRCm38mm10GRCm38
MGSCv371536,433,817 - 36,485,327 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361536,448,651 - 36,500,161 (-)NCBIMGSCv36mm8
Celera1537,131,901 - 37,175,770 (-)NCBICelera
Cytogenetic Map15B3.1NCBI
cM Map1514.48NCBI
Snx31
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8769,560,948 - 69,662,015 (-)NCBIGRCr8
mRatBN7.2767,676,514 - 67,776,925 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl767,676,524 - 67,732,086 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0775,308,847 - 75,364,264 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl775,309,255 - 75,364,166 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0775,456,983 - 75,512,331 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4772,015,735 - 72,070,732 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1772,036,464 - 72,097,245 (-)NCBI
Celera764,756,762 - 64,803,973 (-)NCBICelera
Cytogenetic Map7q22NCBI
Snx31
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541715,778,838 - 15,835,733 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541715,779,500 - 15,835,668 (-)NCBIChiLan1.0ChiLan1.0
SNX31
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27117,916,360 - 118,003,407 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1893,462,508 - 93,539,295 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0897,216,289 - 97,293,064 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1899,389,353 - 99,465,796 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl899,389,362 - 99,465,796 (-)Ensemblpanpan1.1panPan2
SNX31
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1132,425,143 - 2,497,798 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl132,385,611 - 2,498,364 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha132,422,258 - 2,494,793 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0132,578,243 - 2,650,892 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl132,537,109 - 2,651,455 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1132,422,818 - 2,495,566 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0132,534,477 - 2,607,054 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0132,551,812 - 2,624,429 (-)NCBIUU_Cfam_GSD_1.0
Snx31
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530335,258,158 - 35,316,885 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647042,684,346 - 42,742,092 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647042,684,346 - 42,743,001 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNX31
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl436,303,284 - 36,388,952 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1436,303,313 - 36,390,214 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2439,227,961 - 39,312,750 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SNX31
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1895,427,818 - 95,515,132 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl895,428,800 - 95,502,606 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603945,182,262 - 45,258,685 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000008333   ⟹   ENSHGLP00000008244
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247637,455,924 - 7,515,155 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000008334   ⟹   ENSHGLP00000008245
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247637,455,924 - 7,515,155 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000008335   ⟹   ENSHGLP00000008246
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247637,460,404 - 7,515,155 (-)Ensembl
RefSeq Acc Id: XM_004850168   ⟹   XP_004850225
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247637,455,924 - 7,515,110 (-)NCBI
RefSeq Acc Id: XM_021262697   ⟹   XP_021118356
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247637,455,924 - 7,515,112 (-)NCBI
RefSeq Acc Id: XM_021262698   ⟹   XP_021118357
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247637,455,924 - 7,515,115 (-)NCBI
RefSeq Acc Id: XM_021262699   ⟹   XP_021118358
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247637,460,659 - 7,515,114 (-)NCBI
RefSeq Acc Id: XM_021262700   ⟹   XP_021118359
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247637,455,924 - 7,515,117 (-)NCBI
RefSeq Acc Id: XM_021262701   ⟹   XP_021118360
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247637,455,924 - 7,514,865 (-)NCBI
RefSeq Acc Id: XM_021262702   ⟹   XP_021118361
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247637,461,501 - 7,515,114 (-)NCBI
RefSeq Acc Id: XM_021262703   ⟹   XP_021118362
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247637,460,617 - 7,515,120 (-)NCBI
RefSeq Acc Id: XM_021262704   ⟹   XP_021118363
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247637,461,501 - 7,515,119 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021118359   ⟸   XM_021262700
- Peptide Label: isoform X5
RefSeq Acc Id: XP_021118357   ⟸   XM_021262698
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021118356   ⟸   XM_021262697
- Peptide Label: isoform X1
RefSeq Acc Id: XP_004850225   ⟸   XM_004850168
- Peptide Label: isoform X3
- UniProtKB: G5ANZ9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021118360   ⟸   XM_021262701
- Peptide Label: isoform X6
RefSeq Acc Id: XP_021118362   ⟸   XM_021262703
- Peptide Label: isoform X8
RefSeq Acc Id: XP_021118358   ⟸   XM_021262699
- Peptide Label: isoform X4
RefSeq Acc Id: XP_021118363   ⟸   XM_021262704
- Peptide Label: isoform X9
RefSeq Acc Id: XP_021118361   ⟸   XM_021262702
- Peptide Label: isoform X7
RefSeq Acc Id: ENSHGLP00000008244   ⟸   ENSHGLT00000008333
RefSeq Acc Id: ENSHGLP00000008245   ⟸   ENSHGLT00000008334
RefSeq Acc Id: ENSHGLP00000008246   ⟸   ENSHGLT00000008335


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000005963 Ensembl, ENTREZGENE
  ENSHGLG00100010298 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000008333 ENTREZGENE
  ENSHGLT00000008334 ENTREZGENE
  ENSHGLT00000008335 ENTREZGENE
  ENSHGLT00100014073 UniProtKB/TrEMBL
Gene3D-CATH 1.20.80.60 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
  3.30.1520.10 UniProtKB/TrEMBL
InterPro PH-like_dom_sf UniProtKB/TrEMBL
  PX_dom UniProtKB/TrEMBL
  PX_dom_sf UniProtKB/TrEMBL
  SNX17-31_FERM_F1 UniProtKB/TrEMBL
  SNX17-31_FERM_F2 UniProtKB/TrEMBL
  SNX17/27/31 UniProtKB/TrEMBL
  SNX17/31_FERM UniProtKB/TrEMBL
KEGG Report hgl:101720424 UniProtKB/TrEMBL
NCBI Gene Snx31 ENTREZGENE
PANTHER PTHR12431 UniProtKB/TrEMBL
  SORTING NEXIN-31 UniProtKB/TrEMBL
Pfam PF00787 UniProtKB/TrEMBL
  SNX17-27-31_F1_FERM UniProtKB/TrEMBL
  SNX17-31_F2_FERM UniProtKB/TrEMBL
  SNX17_FERM_C UniProtKB/TrEMBL
PROSITE PS50195 UniProtKB/TrEMBL
SMART SM00312 UniProtKB/TrEMBL
Superfamily-SCOP SSF64268 UniProtKB/TrEMBL
UniProt G5ANZ9 ENTREZGENE, UniProtKB/TrEMBL