Slc41a3 (solute carrier family 41 member 3) - Rat Genome Database

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Gene: Slc41a3 (solute carrier family 41 member 3) Heterocephalus glaber
Analyze
Symbol: Slc41a3
Name: solute carrier family 41 member 3
RGD ID: 18915823
Description: ENCODES a protein that exhibits magnesium:sodium antiporter activity (ortholog); INVOLVED IN mitochondrial magnesium ion transmembrane transport (ortholog); FOUND IN mitochondrial inner membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624773480,471 - 534,378 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624773480,486 - 534,985 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Slc41a3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624773480,471 - 534,378 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624773480,486 - 534,985 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
SLC41A3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383126,006,357 - 126,101,520 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3126,005,662 - 126,101,561 (-)Ensemblhg38GRCh38
GRCh373125,725,200 - 125,820,363 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363127,207,890 - 127,285,824 (-)NCBIBuild 36Build 36hg18NCBI36
Build 343127,207,897 - 127,285,832NCBI
Celera3124,148,794 - 124,244,070 (-)NCBICelera
Cytogenetic Map3q21.2-q21.3NCBI
HuRef3123,105,704 - 123,200,963 (-)NCBIHuRef
CHM1_13125,687,978 - 125,783,164 (-)NCBICHM1_1
T2T-CHM13v2.03128,738,761 - 128,834,029 (-)NCBIT2T-CHM13v2.0
Slc41a3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39690,579,043 - 90,623,394 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl690,581,707 - 90,623,394 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38690,604,730 - 90,646,412 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl690,604,725 - 90,646,412 (+)Ensemblmm10GRCm38
MGSCv37690,554,874 - 90,596,406 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36690,570,384 - 90,611,916 (+)NCBIMGSCv36mm8
Celera692,488,674 - 92,530,325 (+)NCBICelera
Cytogenetic Map6D1NCBI
cM Map640.16NCBI
Slc41a3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84124,666,789 - 124,711,968 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4124,666,808 - 124,711,967 (+)EnsemblGRCr8
mRatBN7.24123,109,555 - 123,154,766 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4123,112,748 - 123,154,766 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4128,595,397 - 128,622,433 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04124,369,815 - 124,396,849 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04122,994,391 - 123,021,427 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04123,467,552 - 123,513,447 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4123,467,549 - 123,510,217 (-)Ensemblrn6Rnor6.0
Rnor_5.04187,034,230 - 187,078,591 (+)NCBIRnor_5.0Rnor_5.0rn5
Celera4112,051,998 - 112,078,495 (+)NCBICelera
Cytogenetic Map4q34NCBI
Slc41a3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542121,349,484 - 21,407,171 (-)Ensembl
ChiLan1.0NW_00495542121,349,484 - 21,407,171 (-)NCBIChiLan1.0ChiLan1.0
SLC41A3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22123,950,308 - 124,028,032 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13123,955,089 - 124,032,732 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03123,069,790 - 123,147,408 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13130,388,082 - 130,465,689 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3130,388,082 - 130,465,689 (-)EnsemblpanPan2panpan1.1
SLC41A3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.120120,589 - 211,554 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl20115,011 - 211,075 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha20206,778 - 297,424 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.020179,929 - 270,742 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl20179,933 - 276,163 (-)EnsemblROS_Cfam_1.0 Ensembl
UNSW_CanFamBas_1.020242,088 - 332,824 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.020201,442 - 292,199 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Slc41a3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494219,236,253 - 19,257,034 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936898433,932 - 454,752 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936898433,977 - 454,746 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC41A3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl753,672,130 - 53,748,727 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1753,672,131 - 53,741,033 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2758,703,341 - 58,726,780 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC41A3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12254,950,899 - 55,030,060 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2254,966,562 - 55,031,564 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666041111,281,875 - 111,359,480 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc41a3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1656,270,527 - 56,305,516 (-)NCBIRrattus_CSIRO_v1


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000012188   ⟹   ENSHGLP00000012055
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624773480,471 - 534,378 (+)Ensembl
RefSeq Acc Id: XM_004854160   ⟹   XP_004854217
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624773480,486 - 534,985 (+)NCBI
RefSeq Acc Id: XM_004854161   ⟹   XP_004854218
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624773480,486 - 534,985 (+)NCBI
RefSeq Acc Id: XM_004854162   ⟹   XP_004854219
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624773480,735 - 534,985 (+)NCBI
RefSeq Acc Id: XM_004854164   ⟹   XP_004854221
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624773480,725 - 534,985 (+)NCBI
RefSeq Acc Id: XM_004854165   ⟹   XP_004854222
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624773480,486 - 534,985 (+)NCBI
RefSeq Acc Id: XM_004854166   ⟹   XP_004854223
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624773498,155 - 534,985 (+)NCBI
RefSeq Acc Id: XM_004854167   ⟹   XP_004854224
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624773480,486 - 534,985 (+)NCBI
RefSeq Acc Id: XM_013075647   ⟹   XP_012931101
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624773499,339 - 534,985 (+)NCBI
RefSeq Acc Id: XM_021266010   ⟹   XP_021121669
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624773488,438 - 534,985 (+)NCBI
RefSeq Acc Id: XP_004854217   ⟸   XM_004854160
- Peptide Label: isoform X1
- UniProtKB: A0A0P6J226 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004854224   ⟸   XM_004854167
- Peptide Label: isoform X3
- UniProtKB: A0AAX6PL03 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004854222   ⟸   XM_004854165
- Peptide Label: isoform X2
- UniProtKB: A0AAX6PLY0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004854218   ⟸   XM_004854161
- Peptide Label: isoform X1
- UniProtKB: A0A0P6J226 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004854221   ⟸   XM_004854164
- Peptide Label: isoform X1
- UniProtKB: A0A0P6J226 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004854219   ⟸   XM_004854162
- Peptide Label: isoform X1
- UniProtKB: A0A0P6J226 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021121669   ⟸   XM_021266010
- Peptide Label: isoform X1
- UniProtKB: A0A0P6J226 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004854223   ⟸   XM_004854166
- Peptide Label: isoform X5
- UniProtKB: A0AAX6PKE2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012931101   ⟸   XM_013075647
- Peptide Label: isoform X4
- UniProtKB: A0AAX6R1Q3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000012055   ⟸   ENSHGLT00000012188


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000008631 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000012188 ENTREZGENE
Gene3D-CATH 1.10.357.20 UniProtKB/TrEMBL
InterPro SLC41_membr_dom UniProtKB/TrEMBL
  SLC41_membr_dom_sf UniProtKB/TrEMBL
  SLC41A1-3 UniProtKB/TrEMBL
KEGG Report hgl:101709875 UniProtKB/TrEMBL
NCBI Gene Slc41a3 ENTREZGENE
PANTHER PTHR16228 UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 41 MEMBER 3 UniProtKB/TrEMBL
Pfam MgtE UniProtKB/TrEMBL
Superfamily-SCOP SSF161093 UniProtKB/TrEMBL
UniProt A0A0P6J226 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6PKE2 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6PL03 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6PLY0 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6R1Q3 ENTREZGENE, UniProtKB/TrEMBL