Esyt3 (extended synaptotagmin 3) - Rat Genome Database

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Gene: Esyt3 (extended synaptotagmin 3) Heterocephalus glaber
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Symbol: Esyt3
Name: extended synaptotagmin 3
RGD ID: 18915754
Description: ENCODES a protein that exhibits calcium ion binding (inferred); calcium-dependent phospholipid binding (inferred); lipid binding (inferred); INVOLVED IN endoplasmic reticulum-plasma membrane tethering (inferred); lipid transport (inferred); FOUND IN cytoplasmic side of plasma membrane (ortholog); endoplasmic reticulum-plasma membrane contact site (ortholog); organelle membrane contact site (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Extended synaptotagmin-3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473014,986,750 - 15,033,870 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473014,986,583 - 15,035,163 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074  


Genomics

Comparative Map Data
Esyt3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473014,986,750 - 15,033,870 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473014,986,583 - 15,035,163 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ESYT3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383138,434,616 - 138,481,686 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3138,434,586 - 138,481,686 (+)EnsemblGRCh38hg38GRCh38
GRCh373138,153,458 - 138,200,528 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363139,636,109 - 139,678,399 (+)NCBINCBI36Build 36hg18NCBI36
Celera3136,578,324 - 136,622,170 (+)NCBICelera
Cytogenetic Map3q22.3NCBI
HuRef3135,528,375 - 135,572,226 (+)NCBIHuRef
CHM1_13138,117,188 - 138,161,034 (+)NCBICHM1_1
T2T-CHM13v2.03141,175,169 - 141,222,247 (+)NCBIT2T-CHM13v2.0
Esyt3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39999,192,016 - 99,242,210 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl999,192,016 - 99,240,610 (-)EnsemblGRCm39 Ensembl
GRCm38999,309,963 - 99,360,159 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl999,309,963 - 99,358,557 (-)EnsemblGRCm38mm10GRCm38
MGSCv37999,210,386 - 99,258,949 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36999,119,495 - 99,167,882 (-)NCBIMGSCv36mm8
Celera998,843,495 - 98,893,869 (-)NCBICelera
Cytogenetic Map9E3.3NCBI
cM Map951.54NCBI
Esyt3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88108,749,761 - 108,796,630 (-)NCBIGRCr8
mRatBN7.2899,870,418 - 99,917,298 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl899,871,149 - 99,917,232 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.08107,555,417 - 107,602,414 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8107,555,277 - 107,602,263 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08106,981,121 - 107,027,963 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48104,171,726 - 104,216,761 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera899,272,485 - 99,319,481 (-)NCBICelera
Cytogenetic Map8q31NCBI
Esyt3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955501538,538 - 585,505 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955501537,195 - 585,640 (-)NCBIChiLan1.0ChiLan1.0
ESYT3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22136,340,722 - 136,384,571 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13136,345,050 - 136,392,918 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03135,463,698 - 135,509,417 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13142,913,450 - 142,958,684 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3142,913,450 - 142,958,684 (+)Ensemblpanpan1.1panPan2
ESYT3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12334,645,248 - 34,692,178 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2334,645,087 - 34,691,939 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2334,639,173 - 34,685,862 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02335,187,397 - 35,234,172 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2335,187,162 - 35,233,932 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12334,868,467 - 34,915,155 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02334,934,284 - 34,980,995 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02335,185,169 - 35,231,861 (+)NCBIUU_Cfam_GSD_1.0
Esyt3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560274,005,161 - 74,046,610 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936540744,980 - 785,113 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936540744,980 - 786,303 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ESYT3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1379,245,836 - 79,297,334 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11379,245,818 - 79,295,471 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21386,861,629 - 86,898,873 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ESYT3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11552,062,156 - 52,130,942 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1552,062,357 - 52,104,852 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604125,074,492 - 25,119,220 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000020084   ⟹   ENSHGLP00000019885
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473014,986,750 - 15,033,870 (+)Ensembl
RefSeq Acc Id: XM_004834319   ⟹   XP_004834376
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473014,986,584 - 15,035,163 (+)NCBI
RefSeq Acc Id: XM_021248814   ⟹   XP_021104473
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473014,986,583 - 15,033,326 (+)NCBI
RefSeq Acc Id: XM_021248857   ⟹   XP_021104516
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473014,986,583 - 15,033,326 (+)NCBI
RefSeq Acc Id: XM_021248912   ⟹   XP_021104571
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473014,986,583 - 15,033,326 (+)NCBI
RefSeq Acc Id: XM_021248945   ⟹   XP_021104604
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473014,986,584 - 15,033,875 (+)NCBI
RefSeq Acc Id: XM_021248955   ⟹   XP_021104614
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473014,986,585 - 15,032,691 (+)NCBI
RefSeq Acc Id: XM_021248966   ⟹   XP_021104625
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473014,986,585 - 15,033,349 (+)NCBI
RefSeq Acc Id: XP_021104473   ⟸   XM_021248814
- Peptide Label: isoform X1
- UniProtKB: A0AAX6S8T3 (UniProtKB/TrEMBL),   G5BPL0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104571   ⟸   XM_021248912
- Peptide Label: isoform X4
- UniProtKB: A0AAX6S7E6 (UniProtKB/TrEMBL),   G5BPL0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104516   ⟸   XM_021248857
- Peptide Label: isoform X2
- UniProtKB: A0AAX6S4X4 (UniProtKB/TrEMBL),   G5BPL0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004834376   ⟸   XM_004834319
- Peptide Label: isoform X3
- UniProtKB: A0AAX6NPX5 (UniProtKB/TrEMBL),   G5BPL0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104604   ⟸   XM_021248945
- Peptide Label: isoform X5
- UniProtKB: A0AAX6S7G6 (UniProtKB/TrEMBL),   G5BPL0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104625   ⟸   XM_021248966
- Peptide Label: isoform X6
- UniProtKB: A0AAX6S715 (UniProtKB/TrEMBL),   G5BPL0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104614   ⟸   XM_021248955
- Peptide Label: isoform X6
- UniProtKB: A0AAX6S715 (UniProtKB/TrEMBL),   G5BPL0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000019885   ⟸   ENSHGLT00000020084


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000014239 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000020084 ENTREZGENE
Gene3D-CATH C2 domain UniProtKB/TrEMBL
InterPro C2_dom UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/TrEMBL
  C2C_KIAA1228 UniProtKB/TrEMBL
  Ext_Synaptotagmin_C2A UniProtKB/TrEMBL
  Ext_Synaptotagmin_C2B UniProtKB/TrEMBL
  Extended_Synaptotagmin UniProtKB/TrEMBL
  SMP_LBD UniProtKB/TrEMBL
  Synaptotagmin_SMP UniProtKB/TrEMBL
NCBI Gene Esyt3 ENTREZGENE
PANTHER EXTENDED SYNAPTOTAGMIN-3 UniProtKB/TrEMBL
  EXTENDED SYNAPTOTAGMIN-LIKE PROTEIN 2, ISOFORM C UniProtKB/TrEMBL
Pfam PF00168 UniProtKB/TrEMBL
  SMP_LBD UniProtKB/TrEMBL
PRINTS C2DOMAIN UniProtKB/TrEMBL
PROSITE PS50004 UniProtKB/TrEMBL
  SMP UniProtKB/TrEMBL
SMART SM00239 UniProtKB/TrEMBL
Superfamily-SCOP C2 domain (Calcium/lipid-binding domain, CaLB) UniProtKB/TrEMBL
UniProt A0AAX6NPX5 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6S4X4 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6S715 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6S7E6 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6S7G6 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6S8T3 ENTREZGENE, UniProtKB/TrEMBL
  G5BPL0 ENTREZGENE, UniProtKB/TrEMBL