Tmem135 (transmembrane protein 135) - Rat Genome Database

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Gene: Tmem135 (transmembrane protein 135) Heterocephalus glaber
Analyze
Symbol: Tmem135
Name: transmembrane protein 135
RGD ID: 18915636
Description: INVOLVED IN mitochondrion organization (ortholog); peroxisome organization (ortholog); regulation of oxidative phosphorylation (ortholog); ASSOCIATED WITH exudative vitreoretinopathy 1 (ortholog); genetic disease (ortholog); glioblastoma (ortholog); FOUND IN lipid droplet (inferred); membrane (inferred); mitochondrial membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248452,710,354 - 2,972,290 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248452,710,422 - 2,972,260 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625  


Genomics

Comparative Map Data
Tmem135
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248452,710,354 - 2,972,290 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248452,710,422 - 2,972,260 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
TMEM135
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381187,037,934 - 87,328,824 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1187,037,844 - 87,328,824 (+)EnsemblGRCh38hg38GRCh38
GRCh371186,748,976 - 87,039,866 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361186,426,713 - 86,712,220 (+)NCBINCBI36Build 36hg18NCBI36
Celera1184,060,241 - 84,351,174 (+)NCBICelera
Cytogenetic Map11q14.2NCBI
HuRef1183,035,028 - 83,326,329 (+)NCBIHuRef
CHM1_11186,634,959 - 86,925,799 (+)NCBICHM1_1
T2T-CHM13v2.01186,978,816 - 87,269,939 (+)NCBIT2T-CHM13v2.0
Tmem135
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39788,789,230 - 89,053,911 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl788,788,922 - 89,053,430 (-)EnsemblGRCm39 Ensembl
GRCm38789,140,022 - 89,404,703 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl789,139,714 - 89,404,222 (-)EnsemblGRCm38mm10GRCm38
MGSCv37796,288,231 - 96,487,297 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36789,014,913 - 89,213,788 (-)NCBIMGSCv36mm8
Celera786,493,805 - 86,694,402 (-)NCBICelera
Cytogenetic Map7D3NCBI
cM Map749.32NCBI
Tmem135
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81152,418,929 - 152,692,405 (-)NCBIGRCr8
mRatBN7.21143,006,343 - 143,279,824 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1143,006,344 - 143,221,171 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1150,946,627 - 151,161,989 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01158,123,038 - 158,338,392 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01150,996,971 - 151,212,318 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01152,886,496 - 153,096,225 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1152,886,996 - 153,096,269 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01159,198,115 - 159,407,220 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41145,664,796 - 145,894,704 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11145,906,168 - 145,973,110 (-)NCBI
Celera1141,267,393 - 141,482,030 (-)NCBICelera
Cytogenetic Map1q32NCBI
Tmem135
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554145,810,639 - 6,017,591 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554145,810,639 - 6,016,949 (-)NCBIChiLan1.0ChiLan1.0
TMEM135
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2987,954,391 - 88,228,218 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11189,006,250 - 89,280,250 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01182,089,010 - 82,360,744 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11185,696,632 - 85,966,778 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1185,696,632 - 85,966,778 (+)Ensemblpanpan1.1panPan2
TMEM135
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12112,410,128 - 12,698,099 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2112,411,826 - 12,637,912 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2112,277,258 - 12,563,500 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02112,593,573 - 12,879,856 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2112,593,925 - 12,821,104 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12112,380,331 - 12,666,379 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02112,450,533 - 12,737,862 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02112,507,120 - 12,794,080 (-)NCBIUU_Cfam_GSD_1.0
Tmem135
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494773,188,375 - 73,367,066 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367361,978,110 - 2,113,451 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367361,986,361 - 2,113,455 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM135
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl920,721,991 - 21,021,130 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1920,741,085 - 21,020,899 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TMEM135
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1178,285,287 - 78,539,607 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl178,285,376 - 78,541,905 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604347,180,292 - 47,436,970 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004868215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01088473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01088474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01088475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01088476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01088477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01088478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01088479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01088480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01088481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01088482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01088483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01088484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01088485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01088486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01088487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01088488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GEBF01001494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH168497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000002337   ⟹   ENSHGLP00000002288
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248452,710,354 - 2,972,290 (-)Ensembl
RefSeq Acc Id: XM_004868215   ⟹   XP_004868272
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248452,710,422 - 2,972,260 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004868272 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB04388 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000002288
  ENSHGLP00100016662
GenBank Protein JAO02139 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004868272   ⟸   XM_004868215
- UniProtKB: G5B527 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000002288   ⟸   ENSHGLT00000002337


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000001739 Ensembl, ENTREZGENE
  ENSHGLG00100012302 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000002337 ENTREZGENE
  ENSHGLT00100016842 UniProtKB/TrEMBL
InterPro Tmem135 UniProtKB/TrEMBL
  TMEM135_N UniProtKB/TrEMBL
KEGG Report hgl:101699812 UniProtKB/TrEMBL
NCBI Gene Tmem135 ENTREZGENE
PANTHER PTHR12459 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 135 UniProtKB/TrEMBL
Pfam Tim17 UniProtKB/TrEMBL
  TMEM135_C_rich UniProtKB/TrEMBL
UniProt G5B527 ENTREZGENE, UniProtKB/TrEMBL