Sec14l1 (SEC14 like lipid binding 1) - Rat Genome Database

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Gene: Sec14l1 (SEC14 like lipid binding 1) Heterocephalus glaber
Analyze
Symbol: Sec14l1
Name: SEC14 like lipid binding 1
RGD ID: 18915571
Description: ENCODES a protein that exhibits protein sequestering activity (ortholog); INVOLVED IN choline transport (ortholog); ASSOCIATED WITH genetic disease (ortholog); Monoclonal B-Cell Lymphocytosis (ortholog); FOUND IN cytoplasm (ortholog); Golgi apparatus (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SEC14-like protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248016,890,134 - 6,945,443 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248016,890,278 - 6,942,724 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Sec14l1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248016,890,134 - 6,945,443 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248016,890,278 - 6,942,724 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SEC14L1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381777,088,685 - 77,217,101 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1777,088,749 - 77,217,101 (+)EnsemblGRCh38hg38GRCh38
GRCh371775,084,767 - 75,213,183 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361772,648,647 - 72,724,778 (+)NCBINCBI36Build 36hg18NCBI36
Build 341772,648,616 - 72,724,774NCBI
Celera1771,732,575 - 71,808,664 (+)NCBICelera
Cytogenetic Map17q25.2-q25.3NCBI
HuRef1770,511,931 - 70,641,030 (+)NCBIHuRef
CHM1_11775,149,639 - 75,278,075 (+)NCBICHM1_1
T2T-CHM13v2.01777,981,537 - 78,110,663 (+)NCBIT2T-CHM13v2.0
Sec14l1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911117,005,994 - 117,050,094 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11117,005,994 - 117,050,094 (+)EnsemblGRCm39 Ensembl
GRCm3811117,115,168 - 117,159,268 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11117,115,168 - 117,159,268 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711116,976,486 - 117,020,582 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611116,931,339 - 116,975,311 (+)NCBIMGSCv36mm8
Celera11128,859,607 - 128,903,470 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1181.99NCBI
Sec14l1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810102,818,693 - 102,865,841 (+)NCBIGRCr8
mRatBN7.210102,319,920 - 102,367,070 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10102,319,920 - 102,367,068 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10107,422,983 - 107,470,216 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010106,886,082 - 106,933,320 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010102,240,737 - 102,287,882 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010106,065,712 - 106,112,859 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10106,065,712 - 106,112,857 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010105,718,075 - 105,765,282 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410107,220,734 - 107,267,940 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera10100,886,819 - 100,933,978 (+)NCBICelera
Cytogenetic Map10q32.2NCBI
Sec14l1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555065,158,805 - 5,232,551 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555065,159,090 - 5,231,827 (-)NCBIChiLan1.0ChiLan1.0
SEC14L1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21993,194,000 - 93,269,776 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11798,023,131 - 98,098,962 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01771,221,870 - 71,297,142 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11776,730,168 - 76,857,856 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1776,785,559 - 76,857,848 (+)Ensemblpanpan1.1panPan2
SEC14L1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.193,683,328 - 3,740,271 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl93,659,451 - 3,739,213 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha94,365,609 - 4,422,239 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.094,360,709 - 4,417,642 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl94,360,714 - 4,417,622 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.194,384,488 - 4,441,395 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.094,505,242 - 4,562,080 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.094,587,564 - 4,644,483 (-)NCBIUU_Cfam_GSD_1.0
Sec14l1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056024,303,778 - 4,363,669 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365942,048,054 - 2,100,859 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365942,048,146 - 2,100,808 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SEC14L1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl124,441,114 - 4,489,081 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1124,439,045 - 4,489,078 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2124,186,754 - 4,236,079 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SEC14L1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11644,490,927 - 44,565,922 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1644,489,852 - 44,565,853 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607715,216,709 - 15,293,938 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000024479   ⟹   ENSHGLP00000024260
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248016,890,134 - 6,945,443 (+)Ensembl
RefSeq Acc Id: XM_004860787   ⟹   XP_004860844
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248016,890,278 - 6,942,724 (+)NCBI
RefSeq Acc Id: XM_004860789   ⟹   XP_004860846
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248016,892,477 - 6,942,723 (+)NCBI
RefSeq Acc Id: XM_004860790   ⟹   XP_004860847
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248016,892,477 - 6,942,723 (+)NCBI
RefSeq Acc Id: XM_004860791   ⟹   XP_004860848
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248016,892,477 - 6,942,723 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004860844 (Get FASTA)   NCBI Sequence Viewer  
  XP_004860846 (Get FASTA)   NCBI Sequence Viewer  
  XP_004860847 (Get FASTA)   NCBI Sequence Viewer  
  XP_004860848 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHA99394 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000024260
  ENSHGLP00100019567
GenBank Protein JAO00893 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004860844   ⟸   XM_004860787
- Peptide Label: isoform X1
- UniProtKB: G5AQT4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004860846   ⟸   XM_004860789
- Peptide Label: isoform X2
- UniProtKB: G5AQT4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004860848   ⟸   XM_004860791
- Peptide Label: isoform X2
- UniProtKB: G5AQT4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004860847   ⟸   XM_004860790
- Peptide Label: isoform X2
- UniProtKB: G5AQT4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000024260   ⟸   ENSHGLT00000024479


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000017293 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLG00100014423 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000024479 ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLT00100019770 UniProtKB/TrEMBL
Gene3D-CATH 3.40.525.10 UniProtKB/TrEMBL
  GOLD domain UniProtKB/TrEMBL
InterPro CRAL-TRIO_dom UniProtKB/TrEMBL
  CRAL-TRIO_dom_sf UniProtKB/TrEMBL
  CRAL/TRIO_N_dom UniProtKB/TrEMBL
  CRAL/TRIO_N_dom_sf UniProtKB/TrEMBL
  GOLD_dom UniProtKB/TrEMBL
  GOLD_dom_sf UniProtKB/TrEMBL
  PRELI/MSF1_dom UniProtKB/TrEMBL
NCBI Gene Sec14l1 ENTREZGENE
PANTHER SEC14 RELATED PROTEIN UniProtKB/TrEMBL
  SEC14-LIKE PROTEIN 1 UniProtKB/TrEMBL
Pfam CRAL_TRIO UniProtKB/TrEMBL
  CRAL_TRIO_N UniProtKB/TrEMBL
  PRELI UniProtKB/TrEMBL
PROSITE CRAL_TRIO UniProtKB/TrEMBL
  GOLD UniProtKB/TrEMBL
  PRELI_MSF1 UniProtKB/TrEMBL
SMART CRAL_TRIO_N UniProtKB/TrEMBL
  SEC14 UniProtKB/TrEMBL
Superfamily-SCOP SSF101576 UniProtKB/TrEMBL
  SSF46938 UniProtKB/TrEMBL
  SSF52087 UniProtKB/TrEMBL
UniProt G5AQT4 ENTREZGENE, UniProtKB/TrEMBL