Far1 (fatty acyl-CoA reductase 1) - Rat Genome Database

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Gene: Far1 (fatty acyl-CoA reductase 1) Heterocephalus glaber
Analyze
Symbol: Far1
Name: fatty acyl-CoA reductase 1
RGD ID: 18915473
Description: ENCODES a protein that exhibits alcohol-forming long-chain fatty acyl-CoA reductase activity (inferred); alcohol-forming very long-chain fatty acyl-CoA reductase activity (inferred); oxidoreductase activity (inferred); INVOLVED IN wax biosynthetic process (ortholog); ASSOCIATED WITH CATARACTS, SPASTIC PARAPARESIS, AND SPEECH DELAY (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN membrane (inferred); peroxisomal membrane (inferred); peroxisome (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247665,623,625 - 5,682,464 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247665,622,194 - 5,684,076 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
JBrowse:




References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Far1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247665,623,625 - 5,682,464 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247665,622,194 - 5,684,076 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
FAR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381113,668,668 - 13,732,346 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1113,668,659 - 13,732,346 (+)Ensemblhg38GRCh38
GRCh371113,690,215 - 13,753,893 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361113,646,847 - 13,710,469 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341113,646,846 - 13,710,467NCBI
Celera1113,815,947 - 13,879,631 (+)NCBICelera
Cytogenetic Map11p15.3NCBI
HuRef1113,370,035 - 13,433,296 (+)NCBIHuRef
CHM1_11113,688,782 - 13,752,465 (+)NCBICHM1_1
T2T-CHM13v2.01113,760,976 - 13,824,650 (+)NCBIT2T-CHM13v2.0
Far1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397113,113,008 - 113,170,713 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7113,113,041 - 113,170,718 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm387113,513,719 - 113,571,506 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7113,513,834 - 113,571,511 (+)Ensemblmm10GRCm38
MGSCv377120,657,376 - 120,713,972 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv367113,305,043 - 113,361,639 (+)NCBIMGSCv36mm8
Celera7113,477,286 - 113,533,885 (+)NCBICelera
Cytogenetic Map7F1NCBI
cM Map759.21NCBI
Far1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81177,078,973 - 177,140,363 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1177,079,150 - 177,161,696 (+)EnsemblGRCr8
mRatBN7.21167,644,622 - 167,705,868 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1167,644,677 - 167,705,730 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1175,973,526 - 176,031,557 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01183,159,610 - 183,217,641 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01175,861,729 - 175,919,684 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01178,351,674 - 178,412,838 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1178,351,680 - 178,431,395 (+)Ensemblrn6Rnor6.0
Rnor_5.01185,319,679 - 185,380,870 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41171,379,992 - 171,437,818 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1165,509,151 - 165,567,181 (+)NCBICelera
RGSC_v3.11171,512,762 - 171,559,758 (+)NCBI
Cytogenetic Map1q33NCBI
Far1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541428,938,535 - 28,996,622 (+)Ensembl
ChiLan1.0NW_00495541428,938,535 - 28,996,622 (+)NCBIChiLan1.0ChiLan1.0
FAR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2916,052,192 - 16,116,547 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11116,014,488 - 16,078,863 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01113,774,530 - 13,838,195 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11113,468,757 - 13,531,716 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1113,468,756 - 13,531,716 (+)EnsemblpanPan2panpan1.1
FAR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12136,519,710 - 36,587,002 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2136,520,968 - 36,623,388 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2136,023,546 - 36,090,839 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02137,403,049 - 37,470,383 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2137,403,493 - 37,471,216 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12136,661,379 - 36,728,648 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02136,837,499 - 36,905,087 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02137,126,652 - 37,193,960 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Far1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494748,864,944 - 48,922,471 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365284,897,523 - 4,956,602 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365284,898,920 - 4,956,417 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl245,462,210 - 45,605,107 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1245,532,718 - 45,605,591 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2248,832,695 - 48,904,606 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FAR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1151,106,120 - 51,170,436 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl151,105,908 - 51,170,550 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666038148,675,020 - 148,739,397 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000012800   ⟹   ENSHGLP00000012663
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247665,623,625 - 5,682,464 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000012801   ⟹   ENSHGLP00000012664
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247665,623,736 - 5,682,464 (+)Ensembl
RefSeq Acc Id: XM_004851461   ⟹   XP_004851518
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247665,623,722 - 5,684,076 (+)NCBI
RefSeq Acc Id: XM_004851462   ⟹   XP_004851519
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247665,623,722 - 5,684,076 (+)NCBI
RefSeq Acc Id: XM_021263833   ⟹   XP_021119492
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247665,622,194 - 5,684,076 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004851518 (Get FASTA)   NCBI Sequence Viewer  
  XP_004851519 (Get FASTA)   NCBI Sequence Viewer  
  XP_021119492 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000012663
  ENSHGLP00000012664
GenBank Protein JAO02143 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021119492   ⟸   XM_021263833
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JF05 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004851518   ⟸   XM_004851461
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JF05 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004851519   ⟸   XM_004851462
- Peptide Label: isoform X2
- UniProtKB: A0AAX6PGS0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000012663   ⟸   ENSHGLT00000012800
Ensembl Acc Id: ENSHGLP00000012664   ⟸   ENSHGLT00000012801


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000009052 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000012800 ENTREZGENE
  ENSHGLT00000012801 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH NAD(P)-binding Rossmann-like Domain UniProtKB/TrEMBL
InterPro FAR UniProtKB/TrEMBL
  FAR_C UniProtKB/TrEMBL
  Far_NAD-bd UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/TrEMBL
KEGG Report hgl:101721496 UniProtKB/TrEMBL
NCBI Gene Far1 ENTREZGENE
PANTHER FATTY ACYL-COA REDUCTASE 1 UniProtKB/TrEMBL
  PTHR11011 UniProtKB/TrEMBL
Pfam NAD_binding_4 UniProtKB/TrEMBL
  Sterile UniProtKB/TrEMBL
Superfamily-SCOP SSF51735 UniProtKB/TrEMBL
UniProt A0A0P6JF05 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6PGS0 ENTREZGENE, UniProtKB/TrEMBL