Fmr1nb (FMR1 neighbor) - Rat Genome Database

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Gene: Fmr1nb (FMR1 neighbor) Heterocephalus glaber
Analyze
Symbol: Fmr1nb
Name: FMR1 neighbor
RGD ID: 18915232
Description: ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); syndromic X-linked intellectual disability Lubs type (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: fragile X mental retardation 1 neighbor; fragile X mental retardation 1 neighbor protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624883703,032 - 756,022 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

References

Genomics

Comparative Map Data
Fmr1nb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624883703,032 - 756,022 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
FMR1NB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X147,981,337 - 148,026,665 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX147,981,337 - 148,026,665 (+)EnsemblGRCh38hg38GRCh38
GRCh37X147,062,857 - 147,108,185 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X146,870,541 - 146,915,877 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X146,768,394 - 146,813,726NCBI
CeleraX147,414,813 - 147,460,151 (+)NCBICelera
Cytogenetic MapXq27.3-q28NCBI
HuRefX136,023,421 - 136,069,563 (+)NCBIHuRef
CHM1_1X146,973,820 - 147,019,238 (+)NCBICHM1_1
T2T-CHM13v2.0X146,246,086 - 146,292,191 (+)NCBIT2T-CHM13v2.0
Fmr1nb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X67,805,460 - 67,848,167 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX67,805,445 - 67,848,173 (+)EnsemblGRCm39 Ensembl
GRCm38X68,761,839 - 68,804,561 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX68,761,839 - 68,804,567 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X66,015,014 - 66,057,736 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X65,022,599 - 65,065,107 (+)NCBIMGSCv36mm8
MGSCv36X51,919,311 - 51,961,819 (+)NCBIMGSCv36mm8
Cytogenetic MapXA7.1NCBI
cM MapX34.86NCBI
Fmr1nb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X152,354,238 - 152,377,051 (+)NCBIGRCr8
mRatBN7.2X147,309,613 - 147,332,426 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX147,309,663 - 147,332,418 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX149,513,596 - 149,536,394 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X153,047,935 - 153,070,726 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X150,588,577 - 150,612,124 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X154,631,546 - 154,653,777 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX154,631,547 - 154,653,758 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01150,354,842 - 150,377,036 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X154,833,444 - 154,856,109 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1134,039,225 - 134,062,054 (-)NCBICelera
Cytogenetic MapXq37NCBI
Fmr1nb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955498611,443 - 643,011 (+)NCBIChiLan1.0ChiLan1.0
FMR1NB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X147,294,950 - 147,340,669 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X147,298,556 - 147,344,276 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X137,005,935 - 137,051,290 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X147,435,061 - 147,479,581 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX147,434,908 - 147,479,723 (+)Ensemblpanpan1.1panPan2
FMR1NB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X116,308,537 - 116,342,097 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX116,308,616 - 116,340,556 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX102,201,386 - 102,234,950 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X118,367,671 - 118,401,235 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1X115,480,558 - 115,514,122 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X117,692,129 - 117,725,690 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X117,418,485 - 117,452,784 (+)NCBIUU_Cfam_GSD_1.0
Fmr1nb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X114,350,225 - 114,385,411 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365131,230,966 - 1,264,362 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FMR1NB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1X120,421,266 - 120,458,866 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X137,852,693 - 137,888,912 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FMR1NB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X122,704,558 - 122,749,680 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606560,349,622 - 60,392,592 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_013067898   ⟹   XP_012923352
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624883703,033 - 732,628 (+)NCBI
RefSeq Acc Id: XM_021249162   ⟹   XP_021104821
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624883703,032 - 756,021 (+)NCBI
RefSeq Acc Id: XM_021249163   ⟹   XP_021104822
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624883703,033 - 756,019 (+)NCBI
RefSeq Acc Id: XM_021249164   ⟹   XP_021104823
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624883703,032 - 756,022 (+)NCBI
RefSeq Acc Id: XM_021249165   ⟹   XP_021104824
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624883703,034 - 732,628 (+)NCBI
RefSeq Acc Id: XM_021249166   ⟹   XP_021104825
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624883703,032 - 732,628 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021104823   ⟸   XM_021249164
- Peptide Label: isoform X3
RefSeq Acc Id: XP_021104821   ⟸   XM_021249162
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021104825   ⟸   XM_021249166
- Peptide Label: isoform X6
RefSeq Acc Id: XP_021104822   ⟸   XM_021249163
- Peptide Label: isoform X2
RefSeq Acc Id: XP_012923352   ⟸   XM_013067898
- Peptide Label: isoform X4
RefSeq Acc Id: XP_021104824   ⟸   XM_021249165
- Peptide Label: isoform X5
- UniProtKB: A0A0N8ETP3 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000028863 ENTREZGENE
Ensembl Transcript ENSHGLT00000037776 ENTREZGENE
  ENSHGLT00000037777 ENTREZGENE
NCBI Gene Fmr1nb ENTREZGENE
PANTHER FRAGILE X MENTAL RETARDATION 1 NEIGHBOR PROTEIN UniProtKB/TrEMBL
  FRAGILE X MENTAL RETARDATION 1 NEIGHBOR PROTEIN UniProtKB/TrEMBL
UniProt A0A0N8ETP3 ENTREZGENE, UniProtKB/TrEMBL