Yipf3 (Yip1 domain family member 3) - Rat Genome Database

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Gene: Yipf3 (Yip1 domain family member 3) Heterocephalus glaber
Analyze
Symbol: Yipf3
Name: Yip1 domain family member 3
RGD ID: 18915207
Description: INVOLVED IN cell differentiation (inferred); ASSOCIATED WITH genetic disease (ortholog); infantile Refsum disease (ortholog); renal cell carcinoma (ortholog); FOUND IN cytoplasm (inferred); Golgi apparatus (inferred); intracellular membrane-bounded organelle (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Protein YIPF3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475416,129,419 - 16,133,642 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475416,129,385 - 16,133,642 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Yipf3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475416,129,419 - 16,133,642 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475416,129,385 - 16,133,642 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
YIPF3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38643,511,832 - 43,516,926 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl643,511,832 - 43,516,985 (-)EnsemblGRCh38hg38GRCh38
GRCh37643,479,570 - 43,484,664 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36643,587,543 - 43,592,680 (-)NCBINCBI36Build 36hg18NCBI36
Build 34643,587,542 - 43,592,680NCBI
Celera645,031,186 - 45,036,349 (-)NCBICelera
Cytogenetic Map6p21.1NCBI
HuRef643,197,600 - 43,202,681 (-)NCBIHuRef
CHM1_1643,482,697 - 43,487,860 (-)NCBICHM1_1
T2T-CHM13v2.0643,340,571 - 43,345,690 (-)NCBIT2T-CHM13v2.0
Yipf3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391746,559,019 - 46,563,474 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1746,559,006 - 46,563,463 (+)EnsemblGRCm39 Ensembl
GRCm381746,248,080 - 46,252,537 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1746,248,080 - 46,252,537 (+)EnsemblGRCm38mm10GRCm38
MGSCv371746,385,029 - 46,389,486 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361745,711,680 - 45,715,598 (+)NCBIMGSCv36mm8
Celera1749,681,218 - 49,685,675 (+)NCBICelera
Cytogenetic Map17CNCBI
cM Map1722.9NCBI
Yipf3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8922,227,867 - 22,233,177 (-)NCBIGRCr8
mRatBN7.2914,730,289 - 14,735,644 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl914,730,284 - 14,735,641 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx923,314,532 - 23,319,838 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0928,377,038 - 28,382,322 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0926,677,920 - 26,683,226 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0917,115,308 - 17,120,659 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl917,115,343 - 17,120,677 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0916,011,985 - 16,017,295 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4910,292,858 - 10,298,168 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1910,290,181 - 10,295,490 (-)NCBI
Celera912,477,611 - 12,482,917 (-)NCBICelera
Cytogenetic Map9q12NCBI
Yipf3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554379,342,030 - 9,346,315 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554379,342,030 - 9,346,315 (-)NCBIChiLan1.0ChiLan1.0
YIPF3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2558,012,040 - 58,017,224 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1653,881,825 - 53,886,982 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0643,103,900 - 43,109,033 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1644,394,732 - 44,399,892 (-)NCBIpanpan1.1PanPan1.1panPan2
YIPF3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11211,973,889 - 11,978,261 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1211,974,149 - 11,978,216 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1212,000,065 - 12,004,383 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01212,457,505 - 12,461,823 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1212,457,508 - 12,461,861 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11211,982,905 - 11,987,223 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01212,069,814 - 12,074,132 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01212,163,299 - 12,167,617 (-)NCBIUU_Cfam_GSD_1.0
Yipf3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494647,468,025 - 47,472,759 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647616,487,400 - 16,492,177 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647616,487,405 - 16,492,177 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
YIPF3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl738,506,647 - 38,511,471 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1738,506,642 - 38,511,458 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2744,087,699 - 44,092,508 (-)NCBISscrofa10.2Sscrofa10.2susScr3
YIPF3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11728,642,405 - 28,647,565 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1728,642,586 - 28,647,273 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604443,567,652 - 43,572,827 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


RefSeq Acc Id: ENSHGLT00000027302   ⟹   ENSHGLP00000027062
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475416,129,419 - 16,133,642 (+)Ensembl
RefSeq Acc Id: XM_004846491   ⟹   XP_004846548
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475416,129,387 - 16,133,642 (+)NCBI
RefSeq Acc Id: XM_021259769   ⟹   XP_021115428
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475416,129,385 - 16,133,642 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004846548 (Get FASTA)   NCBI Sequence Viewer  
  XP_021115428 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB10873 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000027062
GenBank Protein JAO03232 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021115428   ⟸   XM_021259769
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004846548   ⟸   XM_004846491
- Peptide Label: isoform X1
- UniProtKB: G5BNM7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000027062   ⟸   ENSHGLT00000027302


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000019245 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000027302 ENTREZGENE
KEGG Report hgl:101710914 UniProtKB/TrEMBL
NCBI Gene Yipf3 ENTREZGENE
PANTHER NATURAL KILLER CELL-SPECIFIC ANTIGEN KLIP1 UniProtKB/TrEMBL
  PTHR15627:SF14 UniProtKB/TrEMBL
UniProt G5BNM7 ENTREZGENE, UniProtKB/TrEMBL