Ppp2r2c (protein phosphatase 2 regulatory subunit Bgamma) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Ppp2r2c (protein phosphatase 2 regulatory subunit Bgamma) Heterocephalus glaber
Analyze
Symbol: Ppp2r2c
Name: protein phosphatase 2 regulatory subunit Bgamma
RGD ID: 18915088
Description: ENCODES a protein that exhibits protein phosphatase regulator activity (inferred); ASSOCIATED WITH Emphysema (ortholog); genetic disease (ortholog); FOUND IN cytosol (inferred); protein phosphatase type 2A complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein phosphatase 2, regulatory subunit B, gamma
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475522,854,961 - 22,933,126 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475522,855,269 - 22,933,149 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ppp2r2c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475522,854,961 - 22,933,126 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475522,855,269 - 22,933,149 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
PPP2R2C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3846,320,581 - 6,563,799 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl46,320,578 - 6,563,600 (-)EnsemblGRCh38hg38GRCh38
GRCh3746,322,308 - 6,565,526 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3646,373,206 - 6,525,227 (-)NCBINCBI36Build 36hg18NCBI36
Build 3446,440,377 - 6,501,669NCBI
Celera46,223,017 - 6,284,392 (-)NCBICelera
Cytogenetic Map4p16.1NCBI
HuRef46,255,749 - 6,490,033 (-)NCBIHuRef
CHM1_146,320,256 - 6,563,374 (-)NCBICHM1_1
T2T-CHM13v2.046,294,675 - 6,540,171 (-)NCBIT2T-CHM13v2.0
Ppp2r2c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39537,024,187 - 37,112,422 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl537,025,857 - 37,112,422 (+)EnsemblGRCm39 Ensembl
GRCm38536,866,846 - 36,955,078 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl536,868,513 - 36,955,078 (+)EnsemblGRCm38mm10GRCm38
MGSCv37537,259,809 - 37,346,317 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36537,156,819 - 37,243,327 (+)NCBIMGSCv36mm8
Celera534,374,910 - 34,406,862 (+)NCBICelera
Cytogenetic Map5B3NCBI
cM Map519.28NCBI
Ppp2r2c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81478,071,274 - 78,156,212 (-)NCBIGRCr8
mRatBN7.21473,846,547 - 73,931,489 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1473,846,547 - 73,931,864 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1478,290,391 - 78,372,505 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01479,531,243 - 79,613,368 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01475,976,206 - 76,058,325 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01478,679,214 - 78,763,175 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1478,679,214 - 78,902,063 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01478,644,679 - 78,727,963 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41479,417,924 - 79,460,075 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11479,420,314 - 79,518,305 (-)NCBI
Celera1472,795,578 - 72,821,075 (-)NCBICelera
Cytogenetic Map14q21NCBI
Ppp2r2c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555143,863,921 - 3,890,779 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555143,863,461 - 3,893,026 (+)NCBIChiLan1.0ChiLan1.0
PPP2R2C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v236,592,133 - 6,835,224 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan146,520,973 - 6,764,117 (-)NCBINHGRI_mPanPan1
PanPan1.146,396,200 - 6,609,737 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl46,393,840 - 6,609,682 (-)Ensemblpanpan1.1panPan2
PPP2R2C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1358,477,762 - 58,611,670 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl358,480,553 - 58,611,852 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha361,169,120 - 61,302,657 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0358,945,620 - 59,079,372 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl358,945,625 - 59,079,319 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1358,442,036 - 58,575,715 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0358,649,826 - 58,783,791 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0358,999,153 - 59,132,725 (-)NCBIUU_Cfam_GSD_1.0
Ppp2r2c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528564,671,734 - 64,768,963 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647718,371,872 - 18,470,661 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647718,372,253 - 18,470,655 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPP2R2C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl84,218,823 - 4,352,039 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.184,218,228 - 4,352,043 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.282,881,355 - 2,896,725 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PPP2R2C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12742,449,615 - 42,691,826 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2742,449,619 - 42,598,391 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604789,242,916 - 89,489,977 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000008845   ⟹   ENSHGLP00000008750
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475522,854,961 - 22,933,126 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000008846   ⟹   ENSHGLP00000008751
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475522,878,357 - 22,933,022 (-)Ensembl
RefSeq Acc Id: XM_004847317   ⟹   XP_004847374
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475522,855,269 - 22,881,820 (-)NCBI
RefSeq Acc Id: XM_004847319   ⟹   XP_004847376
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475522,855,269 - 22,933,149 (-)NCBI
RefSeq Acc Id: XM_004847320   ⟹   XP_004847377
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475522,855,269 - 22,932,962 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004847374 (Get FASTA)   NCBI Sequence Viewer  
  XP_004847376 (Get FASTA)   NCBI Sequence Viewer  
  XP_004847377 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000008750
GenBank Protein JAN99080 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004847376   ⟸   XM_004847319
- Peptide Label: isoform X1
- UniProtKB: A0A0P6J699 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004847377   ⟸   XM_004847320
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004847374   ⟸   XM_004847317
- Peptide Label: isoform X3
RefSeq Acc Id: ENSHGLP00000008750   ⟸   ENSHGLT00000008845
RefSeq Acc Id: ENSHGLP00000008751   ⟸   ENSHGLT00000008846


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000006297 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000008845 ENTREZGENE
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro PP2A_PR55 UniProtKB/TrEMBL
  PP2A_PR55_CS UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene Ppp2r2c ENTREZGENE
PANTHER PTHR11871 UniProtKB/TrEMBL
  SERINE/THREONINE-PROTEIN PHOSPHATASE 2A 55 KDA REGULATORY SUBUNIT B GAMMA ISOFORM UniProtKB/TrEMBL
PIRSF PP2A_PR55 UniProtKB/TrEMBL
PRINTS PP2APR55 UniProtKB/TrEMBL
PROSITE PR55_1 UniProtKB/TrEMBL
  PR55_2 UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
UniProt A0A0P6J699 ENTREZGENE, UniProtKB/TrEMBL