Hs6st3 (heparan sulfate 6-O-sulfotransferase 3) - Rat Genome Database

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Gene: Hs6st3 (heparan sulfate 6-O-sulfotransferase 3) Heterocephalus glaber
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Symbol: Hs6st3
Name: heparan sulfate 6-O-sulfotransferase 3
RGD ID: 18915023
Description: ENCODES a protein that exhibits heparan sulfate 6-O-sulfotransferase activity (ortholog); INVOLVED IN heparan sulfate proteoglycan biosynthetic process (ortholog); heparan sulfate proteoglycan biosynthetic process, enzymatic modification (ortholog); ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); genetic disease (ortholog); holoprosencephaly 5 (ortholog); FOUND IN Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: heparan-sulfate 6-O-sulfotransferase 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248792,678,482 - 3,402,590 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248792,678,403 - 3,408,630 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Hs6st3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248792,678,482 - 3,402,590 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248792,678,403 - 3,408,630 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
HS6ST3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381396,090,107 - 96,839,562 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1396,090,107 - 96,839,562 (+)EnsemblGRCh38hg38GRCh38
GRCh371396,742,361 - 97,491,816 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361395,541,094 - 96,289,813 (+)NCBINCBI36Build 36hg18NCBI36
Build 341395,541,093 - 96,289,812NCBI
Celera1377,590,616 - 78,339,250 (+)NCBICelera
Cytogenetic Map13q32.1NCBI
HuRef1377,340,282 - 78,088,949 (+)NCBIHuRef
CHM1_11396,713,494 - 97,462,214 (+)NCBICHM1_1
T2T-CHM13v2.01395,294,349 - 96,043,658 (+)NCBIT2T-CHM13v2.0
Hs6st3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914119,374,902 - 120,226,864 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl14119,375,753 - 120,107,227 (+)EnsemblGRCm39 Ensembl
GRCm3814119,137,516 - 119,869,815 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14119,138,341 - 119,869,815 (+)EnsemblGRCm38mm10GRCm38
MGSCv3714119,537,487 - 120,269,037 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3614118,273,483 - 119,004,997 (+)NCBIMGSCv36mm8
Celera14117,692,032 - 118,432,138 (+)NCBICelera
Cytogenetic Map14E4NCBI
cM Map1462.67NCBI
Hs6st3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr815102,688,420 - 103,407,725 (+)NCBIGRCr8
mRatBN7.21596,281,502 - 97,000,804 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1596,281,646 - 97,000,462 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx15100,187,141 - 100,922,721 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.015101,319,502 - 102,029,799 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01598,248,330 - 98,971,892 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.015104,448,479 - 105,254,540 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl15104,448,600 - 105,254,214 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.015107,871,035 - 107,871,884 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.015108,635,603 - 108,663,069 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.415104,157,904 - 104,914,126NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1595,121,926 - 95,826,748 (+)NCBICelera
Cytogenetic Map15q24NCBI
Hs6st3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540413,468,128 - 14,128,707 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540413,461,906 - 14,129,089 (-)NCBIChiLan1.0ChiLan1.0
HS6ST3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21497,612,103 - 98,354,539 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11396,671,258 - 97,023,269 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01377,256,399 - 77,998,022 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11396,414,415 - 97,150,741 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1396,414,409 - 97,148,398 (+)Ensemblpanpan1.1panPan2
HS6ST3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12247,257,641 - 47,265,143 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2247,117,757 - 47,259,351 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2246,415,114 - 47,045,651 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02247,059,742 - 47,690,994 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12246,722,627 - 47,354,975 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02246,755,655 - 47,387,212 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02246,792,123 - 47,424,056 (+)NCBIUU_Cfam_GSD_1.0
Hs6st3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945182,140,408 - 182,794,486 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647213,163,842 - 13,811,708 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647213,157,669 - 13,811,747 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HS6ST3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1165,516,097 - 66,187,242 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11165,516,180 - 66,193,410 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21173,192,012 - 73,199,496 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HS6ST3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1374,840,589 - 75,576,397 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604631,277,947 - 32,026,474 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004870839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01097977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01097978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01097979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01097980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01097981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01097982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01097983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01097984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01097985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01097986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01097987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01097988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01097989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01097990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01097991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01097992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01097993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01097994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01097995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01097996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01097997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01097998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01097999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01098000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01098001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01098002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01098003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01098004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01098005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01098006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSHGLT00000004774   ⟹   ENSHGLP00000004711
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248792,678,482 - 3,402,590 (+)Ensembl
RefSeq Acc Id: XM_004870839   ⟹   XP_004870896
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248792,678,403 - 3,408,630 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004870896 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000004711
RefSeq Acc Id: XP_004870896   ⟸   XM_004870839
RefSeq Acc Id: ENSHGLP00000004711   ⟸   ENSHGLT00000004774


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000003455 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000004774 ENTREZGENE
NCBI Gene Hs6st3 ENTREZGENE