Hnf1b (HNF1 homeobox B) - Rat Genome Database

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Gene: Hnf1b (HNF1 homeobox B) Heterocephalus glaber
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Symbol: Hnf1b
Name: HNF1 homeobox B
RGD ID: 18914994
Description: ENCODES a protein that exhibits cis-regulatory region sequence-specific DNA binding (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); identical protein binding (ortholog); INVOLVED IN anterior/posterior pattern specification (ortholog); apoptotic process (ortholog); branching morphogenesis of an epithelial tube (ortholog); PARTICIPATES IN forkhead class A signaling pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); CAKUT (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog); nucleoplasm (ortholog); transcription regulator complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Hepatocyte nuclear factor 1-beta
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248714,661,669 - 4,712,960 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248714,662,104 - 4,713,125 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
animal organ development  (IEA)
anterior/posterior pattern specification  (ISO)
apoptotic process  (ISO)
branching morphogenesis of an epithelial tube  (ISO)
circadian regulation of gene expression  (ISO)
embryonic digestive tract morphogenesis  (ISO)
embryonic morphogenesis  (ISO)
endocrine pancreas development  (ISO)
endoderm development  (ISO)
endodermal cell fate specification  (ISO)
epithelial cell proliferation  (ISO)
epithelium development  (ISO)
genitalia development  (ISO)
hepatoblast differentiation  (ISO)
hepatocyte differentiation  (ISO)
hindbrain development  (ISO)
inner cell mass cell differentiation  (ISO)
insulin secretion  (IEA,ISO)
kidney development  (ISO)
kidney morphogenesis  (ISO)
liver development  (IEA,ISO)
mesenchymal cell apoptotic process involved in metanephros development  (ISO)
mesonephric duct development  (ISO)
mesonephric duct formation  (ISO)
mesonephric tubule development  (ISO)
negative regulation of apoptotic process  (ISO)
negative regulation of mesenchymal cell apoptotic process involved in mesonephric nephron morphogenesis  (ISO)
negative regulation of mesenchymal cell apoptotic process involved in metanephros development  (ISO)
negative regulation of transcription by RNA polymerase II  (ISO)
nephric duct development  (ISO)
nephric duct formation  (ISO)
Notch signaling pathway  (ISO)
pancreas development  (IEA)
positive regulation of DNA-templated transcription  (IEA,ISO)
positive regulation of gene expression  (ISO)
positive regulation of transcription by RNA polymerase II  (ISO)
positive regulation of transcription initiation by RNA polymerase II  (ISO)
pronephric nephron tubule development  (ISO)
pronephros development  (ISO)
protein-DNA complex assembly  (ISO)
regulation of branch elongation involved in ureteric bud branching  (ISO)
regulation of pronephros size  (ISO)
regulation of transcription by RNA polymerase II  (IEA)
regulation of Wnt signaling pathway  (ISO)
response to biphenyl  (ISO)
response to carbohydrate  (ISO)
response to glucose  (ISO)
response to xenobiotic stimulus  (ISO)
system development  (IEA)
ureteric bud elongation  (ISO)

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Hnf1b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248714,661,669 - 4,712,960 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248714,662,104 - 4,713,125 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
HNF1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381737,686,431 - 37,745,059 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1737,686,431 - 37,745,059 (-)EnsemblGRCh38hg38GRCh38
GRCh371736,046,434 - 36,105,050 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361733,120,547 - 33,179,209 (-)NCBINCBI36Build 36hg18NCBI36
Build 341733,162,728 - 33,179,182NCBI
Celera1732,869,487 - 32,928,989 (-)NCBICelera
Cytogenetic Map17q12ENTREZGENE
HuRef1731,984,120 - 32,042,660 (-)NCBIHuRef
CHM1_11736,077,994 - 36,136,668 (-)NCBICHM1_1
T2T-CHM13v2.01738,673,401 - 38,732,032 (-)NCBIT2T-CHM13v2.0
Hnf1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391183,741,035 - 83,796,743 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1183,740,889 - 83,796,645 (+)EnsemblGRCm39 Ensembl
GRCm381183,850,209 - 83,905,917 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1183,850,063 - 83,905,819 (+)EnsemblGRCm38mm10GRCm38
MGSCv371183,664,371 - 83,719,317 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361183,667,244 - 83,721,542 (+)NCBIMGSCv36mm8
Celera1193,455,173 - 93,510,691 (+)NCBICelera
Cytogenetic Map11CNCBI
cM Map1151.23NCBI
Hnf1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81069,233,377 - 69,287,360 (+)NCBIGRCr8
mRatBN7.21068,735,894 - 68,789,888 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1068,735,894 - 68,789,888 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1073,355,884 - 73,409,885 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01072,860,897 - 72,914,896 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01068,325,325 - 68,379,318 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01071,159,863 - 71,218,902 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1071,159,869 - 71,218,902 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01070,778,492 - 70,829,745 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41072,081,091 - 72,187,014 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11072,095,460 - 72,201,382 (+)NCBI
Celera1067,668,848 - 67,719,403 (+)NCBICelera
Cytogenetic Map10q26NCBI
Hnf1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955451320,283 - 371,420 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955451320,283 - 371,420 (+)NCBIChiLan1.0ChiLan1.0
HNF1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21927,010,609 - 27,069,149 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11728,894,053 - 28,952,591 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01719,333,485 - 19,392,147 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11719,633,424 - 19,691,863 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1719,633,424 - 19,691,863 (+)Ensemblpanpan1.1panPan2
HNF1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1937,437,992 - 37,493,200 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl937,438,583 - 37,492,993 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha936,661,511 - 36,717,034 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0938,248,175 - 38,303,484 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl938,248,763 - 38,303,129 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1937,029,129 - 37,084,643 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0937,316,583 - 37,372,144 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0937,403,808 - 37,459,176 (-)NCBIUU_Cfam_GSD_1.0
Hnf1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560236,371,915 - 36,425,499 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936490649,546 - 702,672 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936490649,551 - 702,448 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HNF1B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1239,143,121 - 39,201,631 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11239,143,119 - 39,201,631 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21240,788,316 - 40,846,557 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HNF1B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11630,033,486 - 30,097,106 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1630,036,766 - 30,097,088 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666077760,378 - 820,920 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


RefSeq Acc Id: ENSHGLT00000010783   ⟹   ENSHGLP00000010663
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248714,661,669 - 4,712,960 (-)Ensembl
RefSeq Acc Id: XM_004870426   ⟹   XP_004870483
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248714,662,104 - 4,713,125 (-)NCBI
RefSeq Acc Id: XM_004870427   ⟹   XP_004870484
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248714,662,104 - 4,713,125 (-)NCBI
RefSeq Acc Id: XM_004870428   ⟹   XP_004870485
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248714,662,104 - 4,713,125 (-)NCBI
RefSeq Acc Id: XM_004870429   ⟹   XP_004870486
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248714,662,104 - 4,713,125 (-)NCBI
RefSeq Acc Id: XM_013067671   ⟹   XP_012923125
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248714,662,104 - 4,713,125 (-)NCBI
RefSeq Acc Id: XM_021248676   ⟹   XP_021104335
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248714,662,104 - 4,710,075 (-)NCBI
RefSeq Acc Id: XP_012923125   ⟸   XM_013067671
- Peptide Label: isoform X6
RefSeq Acc Id: XP_004870486   ⟸   XM_004870429
- Peptide Label: isoform X4
- UniProtKB: G5B247 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004870485   ⟸   XM_004870428
- Peptide Label: isoform X3
- UniProtKB: G5B247 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004870484   ⟸   XM_004870427
- Peptide Label: isoform X2
- UniProtKB: A0A0N8EUF4 (UniProtKB/TrEMBL),   G5B247 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004870483   ⟸   XM_004870426
- Peptide Label: isoform X1
- UniProtKB: G5B247 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104335   ⟸   XM_021248676
- Peptide Label: isoform X5
RefSeq Acc Id: ENSHGLP00000010663   ⟸   ENSHGLT00000010783


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000007638 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000010783 ENTREZGENE
Gene3D-CATH 1.10.260.40 UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
InterPro HNF-1 UniProtKB/TrEMBL
  HNF-1_N UniProtKB/TrEMBL
  HNF-1_POU UniProtKB/TrEMBL
  HNF1_dimer_N_dom_sf UniProtKB/TrEMBL
  HNF1b_C UniProtKB/TrEMBL
  HNF_P1 UniProtKB/TrEMBL
  Homeobox-like_sf UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/TrEMBL
  Lambda_DNA-bd_dom_sf UniProtKB/TrEMBL
NCBI Gene Hnf1b ENTREZGENE
PANTHER HEPATOCYTE NUCLEAR FACTOR 1-BETA UniProtKB/TrEMBL
  PTHR11568 UniProtKB/TrEMBL
Pfam HNF-1_N UniProtKB/TrEMBL
  HNF-1B_C UniProtKB/TrEMBL
PROSITE HNF_P1 UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/TrEMBL
  POU_4 UniProtKB/TrEMBL
SMART HOX UniProtKB/TrEMBL
Superfamily-SCOP SSF100957 UniProtKB/TrEMBL
  SSF46689 UniProtKB/TrEMBL
  SSF47413 UniProtKB/TrEMBL
UniProt A0A0N8EUF4 ENTREZGENE, UniProtKB/TrEMBL
  G5B247 ENTREZGENE, UniProtKB/TrEMBL