Nisch (nischarin) - Rat Genome Database

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Gene: Nisch (nischarin) Heterocephalus glaber
Analyze
Symbol: Nisch
Name: nischarin
RGD ID: 18914988
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); glucose metabolic process (ortholog); negative regulation of cell migration (ortholog); ASSOCIATED WITH Bradycardia (ortholog); Breast Neoplasms (ortholog); congenital disorder of glycosylation In (ortholog); FOUND IN cytosol (ortholog); intercellular bridge (ortholog); intracellular membrane-bounded organelle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248224,726,407 - 4,763,508 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248224,725,715 - 4,763,579 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Nisch
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248224,726,407 - 4,763,508 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248224,725,715 - 4,763,579 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
NISCH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38352,455,604 - 52,493,068 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl352,455,118 - 52,493,068 (+)EnsemblGRCh38hg38GRCh38
GRCh37352,489,620 - 52,527,084 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36352,464,564 - 52,502,128 (+)NCBINCBI36Build 36hg18NCBI36
Build 34352,464,671 - 52,502,125NCBI
Celera352,468,769 - 52,506,327 (+)NCBICelera
Cytogenetic Map3p21.1NCBI
HuRef352,552,184 - 52,589,631 (+)NCBIHuRef
CHM1_1352,441,901 - 52,479,443 (+)NCBICHM1_1
T2T-CHM13v2.0352,488,505 - 52,525,966 (+)NCBIT2T-CHM13v2.0
Nisch
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391430,892,885 - 30,928,783 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1430,892,887 - 30,938,903 (-)EnsemblGRCm39 Ensembl
GRCm381431,170,928 - 31,206,826 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1431,170,930 - 31,216,946 (-)EnsemblGRCm38mm10GRCm38
MGSCv371431,984,114 - 32,020,012 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361429,999,937 - 30,020,559 (-)NCBIMGSCv36mm8
Celera1427,429,490 - 27,465,449 (-)NCBICelera
Cytogenetic Map14BNCBI
cM Map1419.09NCBI
Nisch
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8166,370,809 - 6,407,104 (-)NCBIGRCr8
mRatBN7.2166,364,370 - 6,400,675 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl166,364,374 - 6,400,668 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx166,388,854 - 6,412,881 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0167,534,079 - 7,558,106 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0166,395,765 - 6,419,885 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0167,254,372 - 7,290,670 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl167,254,974 - 7,290,561 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0167,182,941 - 7,219,320 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4166,601,521 - 6,637,734 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1166,602,120 - 6,637,709 (-)NCBI
Celera168,788,272 - 8,824,554 (+)NCBICelera
Cytogenetic Map16p16NCBI
Nisch
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554302,443,029 - 2,491,123 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554302,443,029 - 2,488,267 (+)NCBIChiLan1.0ChiLan1.0
NISCH
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2252,450,617 - 52,488,273 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1352,455,389 - 52,493,045 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0352,397,576 - 52,435,127 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1353,626,176 - 53,663,128 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl353,626,317 - 53,662,567 (+)Ensemblpanpan1.1panPan2
NISCH
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12037,278,660 - 37,312,549 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2037,279,282 - 37,312,636 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2037,260,489 - 37,294,003 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02037,628,115 - 37,662,575 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2037,628,116 - 37,662,560 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12036,992,617 - 37,026,536 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02037,401,248 - 37,435,163 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02037,679,538 - 37,719,774 (-)NCBIUU_Cfam_GSD_1.0
Nisch
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118170,156,942 - 170,192,753 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364733,295,515 - 3,331,324 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NISCH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1334,595,782 - 34,630,303 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11334,595,788 - 34,630,306 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21337,809,589 - 37,844,045 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NISCH
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12213,821,026 - 13,860,430 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2213,841,352 - 13,860,498 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041153,039,458 - 153,078,870 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000006289   ⟹   ENSHGLP00000006211
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248224,726,407 - 4,763,508 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000006290   ⟹   ENSHGLP00000006212
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248224,726,407 - 4,729,019 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000006291   ⟹   ENSHGLP00000006213
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248224,727,209 - 4,728,658 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000006292   ⟹   ENSHGLP00000006214
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248224,738,544 - 4,763,508 (-)Ensembl
RefSeq Acc Id: XM_004864392   ⟹   XP_004864449
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248224,725,715 - 4,763,575 (-)NCBI
RefSeq Acc Id: XM_004864393   ⟹   XP_004864450
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248224,725,715 - 4,763,574 (-)NCBI
RefSeq Acc Id: XM_021244098   ⟹   XP_021099757
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248224,725,715 - 4,763,574 (-)NCBI
RefSeq Acc Id: XM_021244099   ⟹   XP_021099758
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248224,737,456 - 4,763,579 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004864449 (Get FASTA)   NCBI Sequence Viewer  
  XP_004864450 (Get FASTA)   NCBI Sequence Viewer  
  XP_021099757 (Get FASTA)   NCBI Sequence Viewer  
  XP_021099758 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000006211
  ENSHGLP00000006214
  ENSHGLP00100021318
GenBank Protein JAN99490 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004864449   ⟸   XM_004864392
- Peptide Label: isoform X1
- UniProtKB: G5BUM3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021099757   ⟸   XM_021244098
- Peptide Label: isoform X3
- UniProtKB: G5BUM3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004864450   ⟸   XM_004864393
- Peptide Label: isoform X2
- UniProtKB: G5BUM3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021099758   ⟸   XM_021244099
- Peptide Label: isoform X4
- UniProtKB: A0A0P6J7C5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000006211   ⟸   ENSHGLT00000006289
RefSeq Acc Id: ENSHGLP00000006212   ⟸   ENSHGLT00000006290
RefSeq Acc Id: ENSHGLP00000006213   ⟸   ENSHGLT00000006291
RefSeq Acc Id: ENSHGLP00000006214   ⟸   ENSHGLT00000006292


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000004536 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLG00100015697 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000006289 ENTREZGENE
  ENSHGLT00000006292 ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLT00100021543 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1520.10 UniProtKB/TrEMBL
  3.80.10.10 UniProtKB/TrEMBL
InterPro Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_4 UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
  Nischarin_PX UniProtKB/TrEMBL
  PX_dom UniProtKB/TrEMBL
  PX_dom_sf UniProtKB/TrEMBL
NCBI Gene Nisch ENTREZGENE
PANTHER NISCHARIN UniProtKB/TrEMBL
  NISCHARIN RELATED UniProtKB/TrEMBL
Pfam LRR_1 UniProtKB/TrEMBL
  LRR_4 UniProtKB/TrEMBL
  PF00787 UniProtKB/TrEMBL
PRINTS LEURICHRPT UniProtKB/TrEMBL
PROSITE LRR UniProtKB/TrEMBL
  PS50195 UniProtKB/TrEMBL
SMART LRR_SD22 UniProtKB/TrEMBL
  LRR_TYP UniProtKB/TrEMBL
  SM00312 UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
  Outer arm dynein light chain 1 UniProtKB/TrEMBL
  SSF64268 UniProtKB/TrEMBL
UniProt A0A0P6J7C5 ENTREZGENE, UniProtKB/TrEMBL
  G5BUM3 ENTREZGENE, UniProtKB/TrEMBL