Otog (otogelin) - Rat Genome Database

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Gene: Otog (otogelin) Heterocephalus glaber
Analyze
Symbol: Otog
Name: otogelin
RGD ID: 18914977
Description: ENCODES a protein that exhibits structural molecule activity (ortholog); INVOLVED IN adult locomotory behavior (ortholog); sensory perception of sound (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); autosomal recessive nonsyndromic deafness (ortholog); autosomal recessive nonsyndromic deafness 18B (ortholog); FOUND IN cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247669,156,158 - 9,232,484 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247669,156,036 - 9,234,200 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Otog
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247669,156,158 - 9,232,484 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247669,156,036 - 9,234,200 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
OTOG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381117,547,259 - 17,646,044 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1117,547,259 - 17,647,150 (+)EnsemblGRCh38hg38GRCh38
GRCh371117,568,806 - 17,667,591 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361117,525,496 - 17,624,067 (+)NCBINCBI36Build 36hg18NCBI36
Build 341117,556,386 - 17,617,057NCBI
Celera1117,698,900 - 17,797,429 (+)NCBICelera
Cytogenetic Map11p15.1NCBI
HuRef1117,252,782 - 17,351,629 (+)NCBIHuRef
CHM1_11117,568,738 - 17,667,255 (+)NCBICHM1_1
T2T-CHM13v2.01117,644,992 - 17,743,744 (+)NCBIT2T-CHM13v2.0
Otog
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39745,890,411 - 45,960,858 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl745,890,411 - 45,960,858 (+)EnsemblGRCm39 Ensembl
GRCm38746,240,987 - 46,311,434 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl746,240,987 - 46,311,434 (+)EnsemblGRCm38mm10GRCm38
MGSCv37753,496,357 - 53,566,804 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36746,109,029 - 46,179,476 (+)NCBIMGSCv36mm8
Celera741,714,550 - 41,784,993 (+)NCBICelera
Cytogenetic Map7B3NCBI
cM Map729.66NCBI
Otog
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81105,882,747 - 105,951,825 (+)NCBIGRCr8
mRatBN7.2196,746,336 - 96,815,416 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl196,746,336 - 96,815,415 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1102,132,474 - 102,201,561 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01110,604,448 - 110,673,536 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01103,894,827 - 103,963,922 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01102,258,124 - 102,327,201 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1102,258,124 - 102,327,201 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01103,342,346 - 103,411,351 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4196,771,215 - 96,840,351 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1196,849,120 - 96,917,280 (+)NCBI
Celera190,994,972 - 91,064,101 (+)NCBICelera
Cytogenetic Map1q22NCBI
Otog
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541432,357,054 - 32,433,849 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541432,353,896 - 32,435,097 (+)NCBIChiLan1.0ChiLan1.0
OTOG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2919,880,690 - 19,980,554 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11119,841,138 - 19,940,945 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01117,601,738 - 17,701,472 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11117,287,150 - 17,386,100 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1117,287,150 - 17,386,100 (+)Ensemblpanpan1.1panPan2
OTOG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12140,103,163 - 40,193,680 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2140,106,826 - 40,192,475 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2139,603,511 - 39,692,219 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02141,208,874 - 41,297,398 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2141,212,048 - 41,297,382 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12140,221,534 - 40,310,382 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02140,428,751 - 40,518,064 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02140,767,627 - 40,856,530 (+)NCBIUU_Cfam_GSD_1.0
Otog
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494745,439,874 - 45,515,004 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365281,475,128 - 1,548,849 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365281,473,842 - 1,549,586 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OTOG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl241,497,200 - 41,584,948 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1241,497,201 - 41,590,564 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2244,516,586 - 44,610,494 (-)NCBISscrofa10.2Sscrofa10.2susScr3
OTOG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1147,323,579 - 47,428,029 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl147,325,745 - 47,425,607 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038144,738,049 - 144,846,447 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


RefSeq Acc Id: ENSHGLT00000009713   ⟹   ENSHGLP00000009606
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247669,156,158 - 9,232,484 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000009714   ⟹   ENSHGLP00000009607
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247669,216,990 - 9,232,484 (+)Ensembl
RefSeq Acc Id: XM_021263876   ⟹   XP_021119535
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247669,156,036 - 9,234,200 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021119535 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000009606
RefSeq Acc Id: XP_021119535   ⟸   XM_021263876
- UniProtKB: G5BNQ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000009606   ⟸   ENSHGLT00000009713
RefSeq Acc Id: ENSHGLP00000009607   ⟸   ENSHGLT00000009714


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000006891 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000009713 ENTREZGENE
Gene3D-CATH 2.80.10.50 UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
InterPro AbfB_ABD UniProtKB/TrEMBL
  AbfB_ABD_sf UniProtKB/TrEMBL
  Cys_knot_C UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  Ser_inhib-like_sf UniProtKB/TrEMBL
  TIL_dom UniProtKB/TrEMBL
  VWF/SSPO/ZAN-like_Cys-rich_dom UniProtKB/TrEMBL
  VWF_dom UniProtKB/TrEMBL
  VWF_type-D UniProtKB/TrEMBL
NCBI Gene Otog ENTREZGENE
PANTHER EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED UniProtKB/TrEMBL
  OTOGELIN UniProtKB/TrEMBL
Pfam AbfB UniProtKB/TrEMBL
  PF08742 UniProtKB/TrEMBL
  TIL UniProtKB/TrEMBL
  VWD UniProtKB/TrEMBL
PROSITE CTCK_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  VWFD UniProtKB/TrEMBL
SMART SM00041 UniProtKB/TrEMBL
  SM00832 UniProtKB/TrEMBL
  VWC_out UniProtKB/TrEMBL
  VWD UniProtKB/TrEMBL
Superfamily-SCOP AbfB domain UniProtKB/TrEMBL
  FnI-like domain UniProtKB/TrEMBL
  Serine protease inhibitors UniProtKB/TrEMBL
UniProt G5BNQ2 ENTREZGENE, UniProtKB/TrEMBL