Znf219 (zinc finger protein 219) - Rat Genome Database

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Gene: Znf219 (zinc finger protein 219) Heterocephalus glaber
Analyze
Symbol: Znf219
Name: zinc finger protein 219
RGD ID: 18914830
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); INVOLVED IN limb bud formation (inferred); negative regulation of DNA-templated transcription (inferred); negative regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); genetic disease (ortholog); purine nucleoside phosphorylase deficiency (ortholog); FOUND IN nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248257,084,757 - 7,090,725 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248257,084,757 - 7,098,942 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Znf219
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248257,084,757 - 7,090,725 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248257,084,757 - 7,098,942 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ZNF219
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381421,090,077 - 21,104,722 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1421,090,077 - 21,104,722 (-)EnsemblGRCh38hg38GRCh38
GRCh371421,558,236 - 21,572,881 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361420,628,045 - 20,642,703 (-)NCBINCBI36Build 36hg18NCBI36
Build 341420,628,075 - 20,636,639NCBI
Celera141,418,766 - 1,433,427 (-)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef141,678,861 - 1,693,061 (-)NCBIHuRef
CHM1_11421,559,994 - 21,574,599 (-)NCBICHM1_1
T2T-CHM13v2.01415,287,493 - 15,302,135 (-)NCBIT2T-CHM13v2.0
Zfp219
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391452,243,532 - 52,258,597 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1452,243,534 - 52,258,190 (-)EnsemblGRCm39 Ensembl
GRCm381452,006,075 - 52,021,140 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1452,006,077 - 52,020,733 (-)EnsemblGRCm38mm10GRCm38
MGSCv371452,625,752 - 52,640,408 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361450,928,036 - 50,942,684 (-)NCBIMGSCv36mm8
Celera1448,986,029 - 49,000,612 (-)NCBICelera
Cytogenetic Map14C2NCBI
cM Map1426.76NCBI
Zfp219
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81527,169,335 - 27,183,555 (-)NCBIGRCr8
mRatBN7.21524,695,831 - 24,710,039 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1524,695,837 - 24,710,030 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1527,467,208 - 27,470,841 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01528,422,654 - 28,426,287 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01526,675,587 - 26,679,220 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01528,402,412 - 28,417,379 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1528,402,415 - 28,406,046 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01532,213,644 - 32,227,436 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41527,434,140 - 27,437,773 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11527,449,841 - 27,453,473 (-)NCBI
Celera1525,001,144 - 25,004,777 (-)NCBICelera
Cytogenetic Map15p14NCBI
Znf219
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555501,854,330 - 1,861,836 (-)NCBIChiLan1.0ChiLan1.0
ZNF219
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21522,541,274 - 22,554,932 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11421,757,761 - 21,771,424 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0141,904,632 - 1,919,304 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11419,986,653 - 20,001,301 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1419,986,653 - 20,000,300 (-)Ensemblpanpan1.1panPan2
ZNF219
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11518,178,861 - 18,186,650 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1518,180,901 - 18,192,773 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1518,664,063 - 18,669,967 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01518,439,418 - 18,453,329 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1518,439,867 - 18,442,670 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11518,120,700 - 18,134,604 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01518,176,683 - 18,182,564 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01518,304,617 - 18,317,573 (-)NCBIUU_Cfam_GSD_1.0
Znf219
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864032,384,494 - 32,398,540 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936880289,876 - 298,243 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936880293,874 - 308,160 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF219
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl778,035,228 - 78,043,464 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1778,028,560 - 78,043,491 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ZNF219
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12921,563,758 - 21,578,127 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2921,564,213 - 21,567,247 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605924,857,549 - 24,872,187 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000005963   ⟹   ENSHGLP00000005889
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248257,084,757 - 7,090,725 (-)Ensembl
RefSeq Acc Id: XM_004865034   ⟹   XP_004865091
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248257,084,757 - 7,090,737 (-)NCBI
RefSeq Acc Id: XM_004865035   ⟹   XP_004865092
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248257,084,757 - 7,098,942 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004865091 (Get FASTA)   NCBI Sequence Viewer  
  XP_004865092 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000005889
  ENSHGLP00100001783
GenBank Protein JAO01841 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004865092   ⟸   XM_004865035
- UniProtKB: A0A0P6JEC8 (UniProtKB/TrEMBL),   G5BFV9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004865091   ⟸   XM_004865034
- UniProtKB: A0A0P6JEC8 (UniProtKB/TrEMBL),   G5BFV9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000005889   ⟸   ENSHGLT00000005963


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000004299 Ensembl, ENTREZGENE
  ENSHGLG00100001389 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000005963 ENTREZGENE
  ENSHGLT00100001823 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report hgl:101724996 UniProtKB/TrEMBL
NCBI Gene Znf219 ENTREZGENE
PANTHER ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 219 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A0P6JEC8 ENTREZGENE, UniProtKB/TrEMBL
  G5BFV9 ENTREZGENE, UniProtKB/TrEMBL