Vamp7 (vesicle associated membrane protein 7) - Rat Genome Database

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Gene: Vamp7 (vesicle associated membrane protein 7) Heterocephalus glaber
Analyze
Symbol: Vamp7
Name: vesicle associated membrane protein 7
RGD ID: 18914750
Description: ENCODES a protein that exhibits syntaxin binding (ortholog); INVOLVED IN autophagosome maturation (ortholog); calcium-ion regulated exocytosis (ortholog); endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); PARTICIPATES IN autophagy pathway; ASSOCIATED WITH autistic disorder (ortholog); head and neck squamous cell carcinoma (ortholog); immunodeficiency 33 (ortholog); FOUND IN apical part of cell (ortholog); azurophil granule membrane (ortholog); cell surface (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: vesicle-associated membrane protein 7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462498040,843 - 94,528 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462498040,937 - 94,547 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Vamp7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462498040,843 - 94,528 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462498040,937 - 94,547 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
VAMP7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38Y57,067,865 - 57,130,289 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38X155,881,345 - 155,943,769 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX155,881,345 - 155,943,769 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p14 EnsemblY57,067,865 - 57,130,289 (+)EnsemblGRCh38hg38GRCh38
GRCh37Y59,214,014 - 59,276,439 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh37X155,111,008 - 155,173,433 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36Y57,623,407 - 57,685,814 (+)NCBINCBI36Build 36hg18NCBI36
Build 36X154,764,207 - 154,826,614 (+)NCBINCBI36Build 36hg18NCBI36
Build 34Y57,552,143 - 57,614,551NCBI
CeleraX155,267,418 - 155,329,920 (+)NCBICelera
Cytogenetic MapXq28 and Yq12NCBI
HuRefX143,593,932 - 143,656,425 (+)NCBIHuRef
CHM1_1X155,022,569 - 155,085,064 (+)NCBICHM1_1
T2T-CHM13v2.0X154,109,337 - 154,171,772 (+)NCBIT2T-CHM13v2.0
T2T-CHM13v2.0Y62,306,325 - 62,368,760 (+)NCBIT2T-CHM13v2.0
Vamp7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Cytogenetic MapX NCBI
Vamp7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81221,842,206 - 21,958,556 (+)NCBIGRCr8
mRatBN7.21216,728,486 - 16,764,261 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1216,728,524 - 16,764,097 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1217,566,927 - 17,592,992 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01218,190,658 - 18,216,722 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01217,244,056 - 17,270,121 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01218,996,566 - 19,033,714 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1218,996,591 - 19,030,381 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01220,989,825 - 21,090,967 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41217,248,700 - 17,278,193 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11217,238,221 - 17,267,715 (-)NCBI
Celera1218,674,387 - 18,700,778 (+)NCBICelera
Cytogenetic Map12q11NCBI
Vamp7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495559418,727 - 72,654 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495559420,496 - 72,648 (-)NCBIChiLan1.0ChiLan1.0
VAMP7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X155,861,375 - 155,924,093 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X155,864,983 - 155,927,704 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X145,362,432 - 145,425,097 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X155,257,593 - 155,320,215 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX155,257,185 - 155,320,215 (+)Ensemblpanpan1.1panPan2
VAMP7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X123,717,524 - 123,783,781 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX123,717,446 - 123,783,014 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX108,704,682 - 108,769,242 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X126,855,012 - 126,919,587 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX126,855,027 - 126,919,572 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X122,587,142 - 122,652,219 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X125,109,846 - 125,174,616 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X124,840,976 - 124,905,504 (+)NCBIUU_Cfam_GSD_1.0
Vamp7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X120,561,625 - 120,609,966 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936958345,055 - 393,384 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VAMP7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX125,863,292 - 125,917,225 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X125,863,266 - 125,917,232 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
VAMP7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X129,937,026 - 129,984,071 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX129,937,046 - 129,984,119 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606568,040,049 - 68,087,731 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000000070   ⟹   ENSHGLP00000000043
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462498040,843 - 94,528 (-)Ensembl
RefSeq Acc Id: XM_004875319   ⟹   XP_004875376
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462498040,937 - 94,547 (-)NCBI
RefSeq Acc Id: XM_013069500   ⟹   XP_012924954
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462498040,937 - 94,541 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004875376 (Get FASTA)   NCBI Sequence Viewer  
  XP_012924954 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000000043
Reference Protein Sequences
RefSeq Acc Id: XP_004875376   ⟸   XM_004875319
- Peptide Label: isoform X1
- UniProtKB: G5BEP2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012924954   ⟸   XM_013069500
- Peptide Label: isoform X2
RefSeq Acc Id: ENSHGLP00000000043   ⟸   ENSHGLT00000000070


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000000070 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000000070 ENTREZGENE
Gene3D-CATH 1.20.5.110 UniProtKB/TrEMBL
  Longin domain UniProtKB/TrEMBL
InterPro Longin-like_dom_sf UniProtKB/TrEMBL
  Longin_dom UniProtKB/TrEMBL
  Synaptobrevin-like UniProtKB/TrEMBL
  V_SNARE_CC UniProtKB/TrEMBL
NCBI Gene Vamp7 ENTREZGENE
PANTHER SNARE PROTEINS UniProtKB/TrEMBL
  VESICLE-ASSOCIATED MEMBRANE PROTEIN 7 UniProtKB/TrEMBL
Pfam Longin UniProtKB/TrEMBL
  Synaptobrevin UniProtKB/TrEMBL
PRINTS SYNAPTOBREVN UniProtKB/TrEMBL
PROSITE LONGIN UniProtKB/TrEMBL
  SYNAPTOBREVIN UniProtKB/TrEMBL
  V_SNARE UniProtKB/TrEMBL
SMART Longin UniProtKB/TrEMBL
Superfamily-SCOP SNARE fusion complex UniProtKB/TrEMBL
  SNARE-like UniProtKB/TrEMBL
UniProt G5BEP2 ENTREZGENE, UniProtKB/TrEMBL