Cuzd1 (CUB and zona pellucida like domains 1) - Rat Genome Database

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Gene: Cuzd1 (CUB and zona pellucida like domains 1) Heterocephalus glaber
Analyze
Symbol: Cuzd1
Name: CUB and zona pellucida like domains 1
RGD ID: 18914675
Description: INVOLVED IN hormone-mediated signaling pathway (ortholog); trypsinogen activation (ortholog); ASSOCIATED WITH craniosynostosis (ortholog); genetic disease (ortholog); FOUND IN zymogen granule (ortholog); zymogen granule membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CUB and zona pellucida-like domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247378,665,998 - 8,676,520 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Cuzd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247378,665,998 - 8,676,520 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CUZD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810122,832,158 - 122,845,857 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10122,832,158 - 122,846,175 (-)EnsemblGRCh38hg38GRCh38
GRCh3710124,591,674 - 124,605,373 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610124,581,664 - 124,595,681 (-)NCBINCBI36Build 36hg18NCBI36
Build 3410124,581,660 - 124,600,300NCBI
Celera10118,298,121 - 118,312,137 (-)NCBICelera
Cytogenetic Map10q26.13NCBI
HuRef10118,209,163 - 118,223,182 (-)NCBIHuRef
CHM1_110124,873,349 - 124,887,368 (-)NCBICHM1_1
T2T-CHM13v2.010123,707,147 - 123,720,845 (-)NCBIT2T-CHM13v2.0
Cuzd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397130,910,283 - 130,924,021 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7130,910,283 - 130,924,021 (-)EnsemblGRCm39 Ensembl
GRCm387131,308,554 - 131,322,292 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7131,308,554 - 131,322,292 (-)EnsemblGRCm38mm10GRCm38
MGSCv377138,452,068 - 138,465,806 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367131,099,702 - 131,113,440 (-)NCBIMGSCv36mm8
Celera7131,119,865 - 131,133,706 (-)NCBICelera
Cytogenetic Map7F3NCBI
cM Map773.81NCBI
Cuzd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81195,519,609 - 195,532,733 (-)NCBIGRCr8
mRatBN7.21186,089,422 - 186,130,536 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1186,089,423 - 186,102,546 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1194,439,582 - 194,452,711 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01201,617,109 - 201,630,102 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01194,288,869 - 194,301,992 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01201,881,846 - 201,894,970 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1201,881,836 - 201,894,775 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01208,914,609 - 208,927,737 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41190,887,527 - 190,900,654 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11191,037,408 - 191,050,535 (-)NCBI
Celera1183,844,186 - 183,857,299 (-)NCBICelera
Cytogenetic Map1q41NCBI
Cuzd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554771,055,229 - 1,069,913 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554771,055,245 - 1,067,702 (-)NCBIChiLan1.0ChiLan1.0
CUZD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28134,682,402 - 134,696,673 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110134,686,822 - 134,702,025 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010119,395,492 - 119,409,696 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110123,669,429 - 123,716,925 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10123,667,289 - 123,716,925 (-)Ensemblpanpan1.1panPan2
CUZD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12832,452,557 - 32,465,111 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2832,452,772 - 32,465,051 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2832,518,689 - 32,531,263 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02833,009,225 - 33,021,810 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2833,009,458 - 33,021,748 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12832,533,078 - 32,545,649 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02832,557,175 - 32,569,757 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02832,808,667 - 32,821,256 (-)NCBIUU_Cfam_GSD_1.0
Cuzd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721314,000,432 - 14,010,842 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648611,550,562 - 11,560,853 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648611,550,513 - 11,560,853 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CUZD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19115,539,466 - 115,553,955 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl9115,539,499 - 115,553,178 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604876,847,948 - 76,861,983 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021253478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01014356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_021253478   ⟹   XP_021109137
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247378,665,998 - 8,676,520 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021109137 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021109137   ⟸   XM_021253478
- UniProtKB: G5C0B2 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Gene3D-CATH Spermadhesin, CUB domain UniProtKB/TrEMBL
  Zona pellucida, ZP-C domain UniProtKB/TrEMBL
  Zona pellucida, ZP-N domain UniProtKB/TrEMBL
InterPro CUB_dom UniProtKB/TrEMBL
  Sperma_CUB_dom_sf UniProtKB/TrEMBL
  ZP-C UniProtKB/TrEMBL
  ZP_chr UniProtKB/TrEMBL
  ZP_dom UniProtKB/TrEMBL
NCBI Gene Cuzd1 ENTREZGENE
PANTHER CUB AND ZONA PELLUCIDA-LIKE DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  ENDOGLIN/TGF-BETA RECEPTOR TYPE III UniProtKB/TrEMBL
Pfam CUB UniProtKB/TrEMBL
  Zona_pellucida UniProtKB/TrEMBL
PRINTS ZPELLUCIDA UniProtKB/TrEMBL
PROSITE CUB UniProtKB/TrEMBL
  ZP_2 UniProtKB/TrEMBL
SMART CUB UniProtKB/TrEMBL
  SM00241 UniProtKB/TrEMBL
Superfamily-SCOP Spermadhesin, CUB domain UniProtKB/TrEMBL
UniProt G5C0B2 ENTREZGENE, UniProtKB/TrEMBL