Txlng (taxilin gamma) - Rat Genome Database

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Gene: Txlng (taxilin gamma) Heterocephalus glaber
Analyze
Symbol: Txlng
Name: taxilin gamma
RGD ID: 18914453
Description: ENCODES a protein that exhibits DNA-binding transcription factor binding (ortholog); INVOLVED IN regulation of bone mineralization (ortholog); regulation of cell cycle process (ortholog); ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytosol (ortholog); nuclear membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: gamma-taxilin
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248291,497,546 - 1,542,025 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248291,497,646 - 1,544,635 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Txlng
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248291,497,546 - 1,542,025 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248291,497,646 - 1,544,635 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
TXLNG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X16,786,466 - 16,844,519 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX16,786,432 - 16,844,519 (+)EnsemblGRCh38hg38GRCh38
GRCh37X16,804,589 - 16,862,642 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X16,714,481 - 16,770,217 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X16,564,216 - 16,619,953NCBI
CeleraX20,923,271 - 20,981,574 (+)NCBICelera
Cytogenetic MapXp22.2NCBI
HuRefX14,564,993 - 14,623,164 (+)NCBIHuRef
CHM1_1X16,834,994 - 16,893,068 (+)NCBICHM1_1
T2T-CHM13v2.0X16,368,976 - 16,427,050 (+)NCBIT2T-CHM13v2.0
Txlng
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X161,561,913 - 161,612,450 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX161,561,915 - 161,612,450 (-)EnsemblGRCm39 Ensembl
GRCm38X162,778,917 - 162,829,454 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX162,778,919 - 162,829,454 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X159,216,851 - 159,267,331 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X158,123,024 - 158,173,504 (-)NCBIMGSCv36mm8
CeleraX146,004,120 - 146,053,747 (-)NCBICelera
Cytogenetic MapXF4NCBI
cM MapX74.99NCBI
Txlng
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X35,495,822 - 35,544,716 (+)NCBIGRCr8
mRatBN7.2X31,864,111 - 31,912,931 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX31,864,111 - 31,912,926 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX32,898,409 - 32,947,222 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X36,333,908 - 36,382,737 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X32,522,807 - 32,571,628 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X33,599,643 - 33,648,525 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX33,599,671 - 33,646,444 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X33,946,641 - 33,995,516 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X52,620,725 - 52,658,066 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX32,168,298 - 32,205,130 (+)NCBICelera
Cytogenetic MapXq14NCBI
Txlng
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555191,484,782 - 1,536,659 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555191,484,782 - 1,536,278 (-)NCBIChiLan1.0ChiLan1.0
TXLNG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X18,581,957 - 18,638,062 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X18,585,353 - 18,643,780 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X9,407,049 - 9,465,452 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X16,776,019 - 16,834,676 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX16,776,076 - 16,831,926 (+)Ensemblpanpan1.1panPan2
TXLNG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X12,924,612 - 12,980,926 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX12,924,672 - 12,978,346 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX12,775,968 - 12,832,274 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X12,887,886 - 12,943,971 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX12,887,877 - 12,943,971 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X12,955,717 - 13,011,789 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X12,942,053 - 12,998,125 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X13,010,709 - 13,066,592 (+)NCBIUU_Cfam_GSD_1.0
Txlng
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X6,054,056 - 6,107,613 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364706,053,905 - 6,109,437 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364706,054,076 - 6,107,613 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TXLNG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX13,229,754 - 13,290,147 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X13,229,680 - 13,292,371 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X14,225,213 - 14,287,917 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TXLNG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X15,213,058 - 15,268,388 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX15,213,156 - 15,265,635 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605617,067,225 - 17,122,941 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


RefSeq Acc Id: ENSHGLT00000004410   ⟹   ENSHGLP00000004350
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248291,497,546 - 1,542,025 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000004411   ⟹   ENSHGLP00000004351
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248291,497,714 - 1,542,025 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000004412   ⟹   ENSHGLP00000004352
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248291,497,714 - 1,542,025 (+)Ensembl
RefSeq Acc Id: XM_004866127   ⟹   XP_004866184
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248291,497,647 - 1,544,635 (+)NCBI
RefSeq Acc Id: XM_004866128   ⟹   XP_004866185
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248291,497,646 - 1,544,635 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004866184 (Get FASTA)   NCBI Sequence Viewer  
  XP_004866185 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000004350
  ENSHGLP00100000053
GenBank Protein JAO03082 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004866185   ⟸   XM_004866128
- Peptide Label: isoform X2
- UniProtKB: G5B0F3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004866184   ⟸   XM_004866127
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JMA0 (UniProtKB/TrEMBL),   G5B0F3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000004350   ⟸   ENSHGLT00000004410
RefSeq Acc Id: ENSHGLP00000004351   ⟸   ENSHGLT00000004411
RefSeq Acc Id: ENSHGLP00000004352   ⟸   ENSHGLT00000004412


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000003178 Ensembl, ENTREZGENE
  ENSHGLG00100000072 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000004410 ENTREZGENE
  ENSHGLT00100000077 UniProtKB/TrEMBL
InterPro Taxilin_fam UniProtKB/TrEMBL
KEGG Report hgl:101706836 UniProtKB/TrEMBL
NCBI Gene Txlng ENTREZGENE
PANTHER GAMMA-TAXILIN UniProtKB/TrEMBL
  PTHR16127 UniProtKB/TrEMBL
Pfam Taxilin UniProtKB/TrEMBL
UniProt A0A0P6JMA0 ENTREZGENE, UniProtKB/TrEMBL
  G5B0F3 ENTREZGENE, UniProtKB/TrEMBL