Cplx1 (complexin 1) - Rat Genome Database

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Gene: Cplx1 (complexin 1) Heterocephalus glaber
Analyze
Symbol: Cplx1
Name: complexin 1
RGD ID: 18914451
Description: ENCODES a protein that exhibits SNARE binding (ortholog); syntaxin-1 binding (ortholog); INVOLVED IN synaptic vesicle exocytosis (ortholog); ASSOCIATED WITH Ataxia (ortholog); bipolar disorder (ortholog); cherubism (ortholog); FOUND IN calyx of Held (ortholog); dendrite (ortholog); glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: complexin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475526,266,614 - 26,288,079 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475526,265,590 - 26,286,203 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cplx1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475526,266,614 - 26,288,079 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475526,265,590 - 26,286,203 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CPLX1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384784,957 - 826,129 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4784,957 - 826,129 (-)EnsemblGRCh38hg38GRCh38
GRCh374778,745 - 819,917 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364768,745 - 809,945 (-)NCBINCBI36Build 36hg18NCBI36
Build 344768,575 - 809,775NCBI
Celera4715,373 - 756,500 (-)NCBICelera
Cytogenetic Map4p16.3NCBI
HuRef4749,326 - 788,854 (-)NCBIHuRef
CHM1_14775,692 - 816,930 (-)NCBICHM1_1
T2T-CHM13v2.04782,738 - 823,932 (-)NCBIT2T-CHM13v2.0
Cplx1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395108,666,420 - 108,697,893 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5108,666,420 - 108,697,890 (-)EnsemblGRCm39 Ensembl
GRCm385108,518,554 - 108,550,027 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5108,518,554 - 108,550,024 (-)EnsemblGRCm38mm10GRCm38
MGSCv375108,947,573 - 108,979,046 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365108,758,861 - 108,790,234 (-)NCBIMGSCv36mm8
Celera5105,640,079 - 105,671,475 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map553.17NCBI
Cplx1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8141,329,073 - 1,360,781 (+)NCBIGRCr8
mRatBN7.2141,184,677 - 1,216,392 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx141,083,688 - 1,115,359 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0142,385,452 - 2,417,121 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0141,082,163 - 1,113,835 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0142,194,895 - 2,226,610 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl142,194,933 - 2,226,598 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0142,189,521 - 2,220,992 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4141,732,344 - 1,763,172 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1141,732,343 - 1,763,172 (+)NCBI
Celera141,225,465 - 1,255,747 (+)NCBICelera
Cytogenetic Map14p22NCBI
Cplx1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955514359,174 - 376,916 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955514359,174 - 376,916 (-)NCBIChiLan1.0ChiLan1.0
CPLX1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v231,101,459 - 1,142,428 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan141,057,716 - 1,098,951 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04889,037 - 930,046 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14819,833 - 858,953 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4819,833 - 858,953 (-)Ensemblpanpan1.1panPan2
CPLX1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1391,635,953 - 91,658,084 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl391,638,515 - 91,656,737 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha394,100,889 - 94,123,599 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0392,634,899 - 92,657,654 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl392,636,465 - 92,657,651 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1391,806,223 - 91,828,878 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0391,859,863 - 91,882,527 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0392,243,776 - 92,266,460 (+)NCBIUU_Cfam_GSD_1.0
Cplx1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528568,613,608 - 68,636,796 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647722,316,018 - 22,338,475 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647722,315,827 - 22,338,488 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CPLX1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8197,882 - 205,371 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18197,876 - 231,721 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2831,143 - 64,220 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CPLX1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12747,959,109 - 48,002,338 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2747,959,091 - 48,002,527 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660514,341,575 - 4,386,462 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000010234   ⟹   ENSHGLP00000010120
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475526,266,614 - 26,288,079 (+)Ensembl
RefSeq Acc Id: XM_004847488   ⟹   XP_004847545
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475526,265,590 - 26,286,203 (+)NCBI
RefSeq Acc Id: XM_004847489   ⟹   XP_004847546
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475526,265,594 - 26,286,203 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004847545 (Get FASTA)   NCBI Sequence Viewer  
  XP_004847546 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000010120
  ENSHGLP00000040024
GenBank Protein JAO02813 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004847545   ⟸   XM_004847488
- UniProtKB: A0A0P6JEE8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004847546   ⟸   XM_004847489
- UniProtKB: A0A0P6JEE8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000010120   ⟸   ENSHGLT00000010234


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000007259 Ensembl, ENTREZGENE
  ENSHGLG00000043599 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000010234 ENTREZGENE
  ENSHGLT00000069607 UniProtKB/TrEMBL
Gene3D-CATH Single Helix bin UniProtKB/TrEMBL
InterPro Synaphin UniProtKB/TrEMBL
KEGG Report hgl:101702175 UniProtKB/TrEMBL
NCBI Gene Cplx1 ENTREZGENE
PANTHER COMPLEXIN-1 UniProtKB/TrEMBL
  PTHR16705 UniProtKB/TrEMBL
Pfam Synaphin UniProtKB/TrEMBL
Superfamily-SCOP SNARE fusion complex UniProtKB/TrEMBL
UniProt A0A0P6JEE8 ENTREZGENE, UniProtKB/TrEMBL