Snrpd3 (small nuclear ribonucleoprotein D3 polypeptide) - Rat Genome Database

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Gene: Snrpd3 (small nuclear ribonucleoprotein D3 polypeptide) Heterocephalus glaber
Analyze
Symbol: Snrpd3
Name: small nuclear ribonucleoprotein D3 polypeptide
RGD ID: 18914431
Description: ENCODES a protein that exhibits enzyme binding (ortholog); histone pre-mRNA DCP binding (ortholog); telomerase RNA binding (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); epilepsy (ortholog); FOUND IN methylosome (ortholog); nuclear body (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: small nuclear ribonucleoprotein Sm D3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247479,962,467 - 9,987,511 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247479,973,949 - 9,987,520 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Snrpd3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247479,962,467 - 9,987,511 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247479,973,949 - 9,987,520 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SNRPD3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382224,555,650 - 24,574,971 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2224,555,958 - 24,582,052 (+)EnsemblGRCh38hg38GRCh38
GRCh372224,951,618 - 24,970,939 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362223,281,618 - 23,298,509 (+)NCBINCBI36Build 36hg18NCBI36
Build 342223,276,171 - 23,293,063NCBI
Celera228,751,341 - 8,768,251 (+)NCBICelera
Cytogenetic Map22q11.23NCBI
HuRef227,901,312 - 7,920,624 (+)NCBIHuRef
CHM1_12224,910,367 - 24,929,747 (+)NCBICHM1_1
T2T-CHM13v2.02225,017,257 - 25,036,577 (+)NCBIT2T-CHM13v2.0
Snrpd3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391075,353,852 - 75,371,300 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1075,353,385 - 75,373,215 (+)EnsemblGRCm39 Ensembl
GRCm381075,518,042 - 75,535,440 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1075,517,551 - 75,537,381 (+)EnsemblGRCm38mm10GRCm38
MGSCv371074,980,787 - 74,998,185 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361074,961,758 - 74,979,156 (+)NCBIMGSCv36mm8
Celera1076,562,802 - 76,580,214 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1038.55NCBI
Snrpd3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82013,129,555 - 13,145,100 (-)NCBIGRCr8
mRatBN7.22013,130,112 - 13,145,947 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2013,130,119 - 13,145,978 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2013,836,690 - 13,852,053 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02013,197,636 - 13,212,999 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02013,670,141 - 13,685,504 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02014,080,562 - 14,095,644 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2014,080,565 - 14,095,181 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02016,265,897 - 16,280,500 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera2014,615,859 - 14,631,320 (-)NCBICelera
Cytogenetic Map20p12NCBI
Snrpd3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554558,021,946 - 8,046,439 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554558,021,946 - 8,045,325 (+)NCBIChiLan1.0ChiLan1.0
SNRPD3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22334,344,733 - 34,361,094 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12237,075,419 - 37,091,705 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0225,361,886 - 5,378,465 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12222,227,328 - 22,255,511 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2222,227,328 - 22,246,676 (+)Ensemblpanpan1.1panPan2
SNRPD3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12628,247,878 - 28,263,519 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2627,322,650 - 27,338,477 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02629,651,819 - 29,667,871 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2629,652,275 - 29,667,868 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12627,735,763 - 27,751,600 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02627,352,755 - 27,368,580 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02628,342,420 - 28,358,470 (+)NCBIUU_Cfam_GSD_1.0
Snrpd3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118142,009,519 - 142,025,363 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936619728,114 - 745,551 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936619728,759 - 744,367 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNRPD3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11449,585,177 - 49,598,015 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21453,027,337 - 53,039,880 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SNRPD3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1197,560,946 - 7,577,338 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl197,417,483 - 7,577,914 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660854,743,649 - 4,779,869 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000023348   ⟹   ENSHGLP00000023133
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247479,962,467 - 9,987,511 (+)Ensembl
RefSeq Acc Id: XM_004843545   ⟹   XP_004843602
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247479,973,949 - 9,987,517 (+)NCBI
RefSeq Acc Id: XM_004843546   ⟹   XP_004843603
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247479,973,999 - 9,987,517 (+)NCBI
RefSeq Acc Id: XM_004843548   ⟹   XP_004843605
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247479,983,638 - 9,987,520 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004843602 (Get FASTA)   NCBI Sequence Viewer  
  XP_004843603 (Get FASTA)   NCBI Sequence Viewer  
  XP_004843605 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000023133
  ENSHGLP00000046923
  ENSHGLP00100045408
GenBank Protein JAN96350 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004843602   ⟸   XM_004843545
- Peptide Label: isoform X1
- UniProtKB: A0A0P6IXJ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004843603   ⟸   XM_004843546
- Peptide Label: isoform X1
- UniProtKB: A0A0P6IXJ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004843605   ⟸   XM_004843548
- Peptide Label: isoform X2
RefSeq Acc Id: ENSHGLP00000023133   ⟸   ENSHGLT00000023348


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000016496 Ensembl, ENTREZGENE
  ENSHGLG00000044971 UniProtKB/TrEMBL
  ENSHGLG00100047707 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000023348 ENTREZGENE
  ENSHGLT00000087422 UniProtKB/TrEMBL
  ENSHGLT00100052042 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.100 UniProtKB/TrEMBL
InterPro IPR047575 UniProtKB/TrEMBL
  LSm4/Sm_D1/D3 UniProtKB/TrEMBL
  LSM_dom_euk/arc UniProtKB/TrEMBL
  LSM_dom_sf UniProtKB/TrEMBL
  SmD3 UniProtKB/TrEMBL
KEGG Report hgl:101719211 UniProtKB/TrEMBL
NCBI Gene Snrpd3 ENTREZGENE
PANTHER PTHR23338 UniProtKB/TrEMBL
  SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3 UniProtKB/TrEMBL
Pfam LSM UniProtKB/TrEMBL
PROSITE PS52002 UniProtKB/TrEMBL
SMART SM00651 UniProtKB/TrEMBL
Superfamily-SCOP SSF50182 UniProtKB/TrEMBL
UniProt A0A0P6IXJ0 ENTREZGENE, UniProtKB/TrEMBL
  G5B630_HETGA UniProtKB/TrEMBL