Adam18 (ADAM metallopeptidase domain 18) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Adam18 (ADAM metallopeptidase domain 18) Heterocephalus glaber
Analyze
Symbol: Adam18
Name: ADAM metallopeptidase domain 18
RGD ID: 18914190
Description: ASSOCIATED WITH genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: disintegrin and metalloproteinase domain-containing protein 18; disintegrin and metalloproteinase domain-containing protein 5; Putative disintegrin and metalloproteinase domain-containing protein 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247804,054,259 - 4,186,989 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Adam18
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247804,054,259 - 4,186,989 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ADAM18
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38839,584,568 - 39,730,065 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl839,584,489 - 39,730,065 (+)EnsemblGRCh38hg38GRCh38
GRCh37839,442,087 - 39,587,584 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36839,561,299 - 39,706,644 (+)NCBINCBI36Build 36hg18NCBI36
Build 34839,561,298 - 39,706,644NCBI
Celera838,393,916 - 38,539,440 (+)NCBICelera
Cytogenetic Map8p11.22NCBI
HuRef837,975,660 - 38,121,135 (+)NCBIHuRef
CHM1_1839,489,004 - 39,634,486 (+)NCBICHM1_1
T2T-CHM13v2.0839,861,797 - 40,007,263 (+)NCBIT2T-CHM13v2.0
Adam18
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39825,092,262 - 25,164,771 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl825,092,262 - 25,164,771 (-)EnsemblGRCm39 Ensembl
GRCm38824,602,246 - 24,674,755 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl824,602,246 - 24,674,755 (-)EnsemblGRCm38mm10GRCm38
MGSCv37825,712,718 - 25,785,227 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36826,067,791 - 26,140,298 (-)NCBIMGSCv36mm8
Celera826,087,026 - 26,155,195 (-)NCBICelera
Cytogenetic Map8A2NCBI
cM Map812.82NCBI
Adam18
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81674,054,974 - 74,127,861 (+)NCBIGRCr8
mRatBN7.21667,352,360 - 67,425,820 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1667,352,416 - 67,425,248 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1672,629,559 - 72,702,392 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01676,035,233 - 76,106,789 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01671,284,611 - 71,355,984 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01672,139,100 - 72,210,902 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1672,139,063 - 72,210,900 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01671,786,188 - 71,860,908 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41671,782,433 - 71,860,913 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11671,811,509 - 71,861,178 (+)NCBI
Celera1665,253,599 - 65,324,726 (+)NCBICelera
Cytogenetic Map16q12.4-q12.5NCBI
Adam18
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555363,012,888 - 3,109,418 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555363,014,457 - 3,109,257 (-)NCBIChiLan1.0ChiLan1.0
ADAM18
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11625,566,325 - 25,750,364 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1625,567,301 - 25,750,185 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1626,075,839 - 26,259,260 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01627,393,923 - 27,572,951 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11625,691,171 - 25,875,353 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01626,246,883 - 26,430,558 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01626,305,998 - 26,489,651 (+)NCBIUU_Cfam_GSD_1.0
Adam18
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494348,635,487 - 48,772,589 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936843707,093 - 836,657 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936843805,614 - 836,657 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ADAM18
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl179,166,119 - 9,233,952 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1179,178,152 - 9,233,147 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21710,940,383 - 10,995,690 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ADAM18
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1837,600,595 - 37,743,772 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl837,601,156 - 37,743,650 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660524,187,395 - 4,334,713 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


RefSeq Acc Id: XM_013076036   ⟹   XP_012931490
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247804,054,259 - 4,186,989 (-)NCBI
RefSeq Acc Id: XM_021236891   ⟹   XP_021092550
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247804,054,259 - 4,186,989 (-)NCBI
RefSeq Acc Id: XM_021236892   ⟹   XP_021092551
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247804,054,259 - 4,186,989 (-)NCBI
RefSeq Acc Id: XR_002386393
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247804,069,126 - 4,186,989 (-)NCBI
Protein Sequences
Protein RefSeqs XP_012931490 (Get FASTA)   NCBI Sequence Viewer  
  XP_021092550 (Get FASTA)   NCBI Sequence Viewer  
  XP_021092551 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB05206 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000005575
RefSeq Acc Id: XP_021092550   ⟸   XM_021236891
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021092551   ⟸   XM_021236892
- Peptide Label: isoform X3
RefSeq Acc Id: XP_012931490   ⟸   XM_013076036
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000004079 ENTREZGENE
Ensembl Transcript ENSHGLT00000005647 ENTREZGENE
NCBI Gene Adam18 ENTREZGENE