Dpm2 (dolichyl-phosphate mannosyltransferase subunit 2, regulatory) - Rat Genome Database

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Gene: Dpm2 (dolichyl-phosphate mannosyltransferase subunit 2, regulatory) Heterocephalus glaber
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Symbol: Dpm2
Name: dolichyl-phosphate mannosyltransferase subunit 2, regulatory
RGD ID: 18914011
Description: ENCODES a protein that exhibits dolichyl-phosphate beta-D-mannosyltransferase activity (ortholog); enzyme activator activity (ortholog); enzyme regulator activity (ortholog); INVOLVED IN dolichol metabolic process (ortholog); GPI anchor biosynthetic process (ortholog); regulation of protein stability (ortholog); ASSOCIATED WITH congenital disorder of glycosylation Iu (ortholog); developmental and epileptic encephalopathy (ortholog); developmental and epileptic encephalopathy 31A (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex (ortholog); perinuclear region of cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: dolichol phosphate-mannose biosynthesis regulatory protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247607,638,437 - 7,640,810 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247607,638,497 - 7,640,810 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Dpm2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247607,638,437 - 7,640,810 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247607,638,497 - 7,640,810 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
DPM2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389127,935,099 - 127,937,854 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9127,935,099 - 127,937,854 (-)EnsemblGRCh38hg38GRCh38
GRCh379130,697,378 - 130,700,133 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369129,737,203 - 129,739,956 (-)NCBINCBI36Build 36hg18NCBI36
Build 349127,776,935 - 127,779,689NCBI
Celera9101,348,597 - 101,351,986 (-)NCBICelera
Cytogenetic Map9q34.11NCBI
HuRef9100,314,315 - 100,317,704 (-)NCBIHuRef
CHM1_19130,849,673 - 130,853,062 (-)NCBICHM1_1
T2T-CHM13v2.09140,142,875 - 140,145,630 (-)NCBIT2T-CHM13v2.0
Dpm2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39232,460,870 - 32,463,583 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl232,460,870 - 32,463,591 (+)EnsemblGRCm39 Ensembl
GRCm38232,570,858 - 32,573,571 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl232,570,858 - 32,573,579 (+)EnsemblGRCm38mm10GRCm38
MGSCv37232,426,378 - 32,429,091 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36232,392,867 - 32,395,580 (+)NCBIMGSCv36mm8
Celera232,276,654 - 32,279,355 (+)NCBICelera
Cytogenetic Map2BNCBI
cM Map222.09NCBI
Dpm2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8336,253,548 - 36,256,592 (+)NCBIGRCr8
mRatBN7.2315,855,952 - 15,858,867 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl315,856,182 - 15,869,165 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl315,856,182 - 15,869,165 (+)NCBImRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx318,924,614 - 18,927,514 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0327,509,621 - 27,512,521 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0325,760,361 - 25,763,278 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0311,587,941 - 11,590,528 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl311,587,941 - 11,590,528 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0316,938,350 - 16,940,937 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera310,596,003 - 10,598,592 (+)NCBICelera
RH 3.4 Map383.1RGD
Cytogenetic Map3p11NCBI
Dpm2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955419740,815 - 743,036 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955419740,815 - 743,036 (+)NCBIChiLan1.0ChiLan1.0
DPM2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21111,415,475 - 11,418,327 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1911,415,399 - 11,420,675 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0999,055,271 - 99,058,058 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19127,725,783 - 127,729,589 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9127,725,780 - 127,729,589 (-)Ensemblpanpan1.1panPan2
DPM2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1955,484,244 - 55,488,359 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl955,485,605 - 55,487,735 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha954,679,431 - 54,682,461 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0956,407,404 - 56,410,419 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl956,407,680 - 56,409,795 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1955,167,501 - 55,170,426 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0955,482,125 - 55,485,141 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0955,573,351 - 55,576,367 (+)NCBIUU_Cfam_GSD_1.0
Dpm2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947195,796,624 - 195,801,080 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648715,565,176 - 15,567,881 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648715,565,151 - 15,567,856 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DPM2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1268,418,445 - 268,423,552 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11268,420,273 - 268,423,557 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21302,342,022 - 302,345,311 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DPM2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11210,184,087 - 10,187,463 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1210,185,040 - 10,187,279 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660796,031,269 - 6,034,645 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000025518   ⟹   ENSHGLP00000025296
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247607,638,437 - 7,640,810 (+)Ensembl
RefSeq Acc Id: XM_004849283   ⟹   XP_004849340
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247607,638,497 - 7,640,810 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004849340 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000025296
GenBank Protein JAO01390 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004849340   ⟸   XM_004849283
- UniProtKB: A0A0N8EU90 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000025296   ⟸   ENSHGLT00000025518


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000018025 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000025518 ENTREZGENE
InterPro DPM2 UniProtKB/TrEMBL
KEGG Report hgl:101716252 UniProtKB/TrEMBL
NCBI Gene Dpm2 ENTREZGENE
PANTHER DOLICHOL PHOSPHATE-MANNOSE BIOSYNTHESIS REGULATORY PROTEIN UniProtKB/TrEMBL
  PTHR15039 UniProtKB/TrEMBL
Pfam DPM2 UniProtKB/TrEMBL
UniProt A0A0N8EU90 ENTREZGENE, UniProtKB/TrEMBL