Cdc42ep2 (CDC42 effector protein 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Cdc42ep2 (CDC42 effector protein 2) Heterocephalus glaber
Analyze
Symbol: Cdc42ep2
Name: CDC42 effector protein 2
RGD ID: 18913951
Description: ENCODES a protein that exhibits GTPase activator activity (inferred); opioid peptide activity (inferred); small GTPase binding (inferred); INVOLVED IN cellular response to type II interferon (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); Bardet-Biedl syndrome (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); endomembrane system (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476721,059,993 - 21,066,829 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476721,057,316 - 21,066,220 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Cdc42ep2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476721,059,993 - 21,066,829 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476721,057,316 - 21,066,220 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CDC42EP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381165,314,866 - 65,322,417 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1165,314,866 - 65,322,417 (+)EnsemblGRCh38hg38GRCh38
GRCh371165,082,337 - 65,089,888 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361164,838,907 - 64,846,476 (+)NCBINCBI36Build 36hg18NCBI36
Build 341164,838,906 - 64,846,475NCBI
Celera1162,408,688 - 62,416,256 (+)NCBICelera
Cytogenetic Map11q13.1NCBI
HuRef1161,409,324 - 61,416,936 (+)NCBIHuRef
CHM1_11164,966,301 - 64,973,912 (+)NCBICHM1_1
T2T-CHM13v2.01165,308,188 - 65,315,743 (+)NCBIT2T-CHM13v2.0
Cdc42ep2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39195,967,584 - 5,974,844 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl195,965,664 - 5,974,844 (-)EnsemblGRCm39 Ensembl
GRCm38195,917,556 - 5,924,816 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl195,915,636 - 5,924,816 (-)EnsemblGRCm38mm10GRCm38
MGSCv37195,917,561 - 5,918,995 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36195,917,561 - 5,924,774 (-)NCBIMGSCv36mm8
Celera195,787,602 - 5,789,036 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map194.34NCBI
Cdc42ep2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81212,631,317 - 212,640,231 (-)NCBIGRCr8
mRatBN7.21203,202,000 - 203,210,891 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1203,201,873 - 203,210,897 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1211,555,702 - 211,564,540 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01218,647,398 - 218,656,226 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01211,338,448 - 211,347,276 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01221,272,349 - 221,281,252 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1221,272,353 - 221,281,180 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01228,203,831 - 228,212,721 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41208,548,137 - 208,556,965 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11208,701,590 - 208,710,418 (-)NCBI
Celera1200,736,957 - 200,745,785 (-)NCBICelera
Cytogenetic Map1q43NCBI
Cdc42ep2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542219,922,179 - 19,928,570 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542219,922,179 - 19,928,570 (-)NCBIChiLan1.0ChiLan1.0
CDC42EP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2966,550,093 - 66,557,579 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11167,592,795 - 67,599,963 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01160,679,582 - 60,686,763 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11164,018,265 - 64,025,801 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1164,024,281 - 64,024,913 (+)Ensemblpanpan1.1panPan2
CDC42EP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11851,854,975 - 51,863,594 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1851,857,367 - 51,858,011 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1850,463,024 - 50,471,638 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01852,896,603 - 52,905,212 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1852,896,603 - 52,905,140 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11851,992,472 - 52,001,078 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01851,565,647 - 51,574,280 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01852,359,792 - 52,368,411 (-)NCBIUU_Cfam_GSD_1.0
CDC42EP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl26,895,847 - 6,904,040 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.126,897,497 - 6,904,040 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.226,030,298 - 6,036,399 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CDC42EP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.118,914,214 - 8,921,031 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl18,914,787 - 8,915,437 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038106,224,453 - 106,231,799 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000009562   ⟹   ENSHGLP00000009455
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476721,059,993 - 21,066,829 (-)Ensembl
RefSeq Acc Id: XM_004852410   ⟹   XP_004852467
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476721,057,316 - 21,066,220 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004852467 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000009455
  ENSHGLP00000029911
  ENSHGLP00000057965
  ENSHGLP00000058992
  ENSHGLP00100019862
  ENSHGLP00100039715
  ENSHGLP00100047196
  ENSHGLP00100048200
GenBank Protein JAN96578 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004852467   ⟸   XM_004852410
- UniProtKB: A0A0P6IY10 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000009455   ⟸   ENSHGLT00000009562


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000006786 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLG00100014641 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000009562 ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLT00000063490 UniProtKB/TrEMBL
  ENSHGLT00000071103 UniProtKB/TrEMBL
  ENSHGLT00000090678 UniProtKB/TrEMBL
  ENSHGLT00100020074 UniProtKB/TrEMBL
  ENSHGLT00100044048 UniProtKB/TrEMBL
  ENSHGLT00100058182 UniProtKB/TrEMBL
  ENSHGLT00100073558 UniProtKB/TrEMBL
InterPro Cdc42_effect UniProtKB/TrEMBL
  Cdc42_effector_prot_2 UniProtKB/TrEMBL
  CRIB_dom UniProtKB/TrEMBL
NCBI Gene Cdc42ep2 ENTREZGENE
PANTHER CDC42 EFFECTOR PROTEIN 2 UniProtKB/TrEMBL
  CDC42 EFFECTOR PROTEIN BORG UniProtKB/TrEMBL
Pfam BORG_CEP UniProtKB/TrEMBL
  PBD UniProtKB/TrEMBL
PIRSF Cdc42_effector_p2 UniProtKB/TrEMBL
PROSITE CRIB UniProtKB/TrEMBL
SMART PBD UniProtKB/TrEMBL
UniProt A0A0P6IY10 ENTREZGENE, UniProtKB/TrEMBL