Zmynd15 (zinc finger MYND-type containing 15) - Rat Genome Database

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Gene: Zmynd15 (zinc finger MYND-type containing 15) Heterocephalus glaber
Analyze
Symbol: Zmynd15
Name: zinc finger MYND-type containing 15
RGD ID: 18913948
Description: ENCODES a protein that exhibits histone deacetylase binding (inferred); metal ion binding (inferred); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); spermatid development (ortholog); ASSOCIATED WITH genetic disease (ortholog); male infertility (ortholog); spermatogenic failure 14 (ortholog); FOUND IN cytoplasm (ortholog); male germ cell nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Zinc finger MYND domain-containing protein 15
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247868,594,479 - 8,600,154 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247868,593,815 - 8,600,078 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Zmynd15
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247868,594,479 - 8,600,154 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247868,593,815 - 8,600,078 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ZMYND15
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38174,739,833 - 4,746,119 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl174,739,833 - 4,746,119 (+)EnsemblGRCh38hg38GRCh38
GRCh37174,643,128 - 4,649,414 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36174,590,086 - 4,596,157 (+)NCBINCBI36Build 36hg18NCBI36
Build 34174,590,085 - 4,596,154NCBI
Celera174,658,522 - 4,664,613 (+)NCBICelera
Cytogenetic Map17p13.2NCBI
HuRef174,531,669 - 4,537,772 (+)NCBIHuRef
CHM1_1174,652,040 - 4,658,146 (+)NCBICHM1_1
T2T-CHM13v2.0174,629,276 - 4,635,789 (+)NCBIT2T-CHM13v2.0
Zmynd15
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391170,350,259 - 70,357,028 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1170,350,259 - 70,357,028 (+)EnsemblGRCm39 Ensembl
GRCm381170,459,433 - 70,466,204 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1170,459,433 - 70,466,202 (+)EnsemblGRCm38mm10GRCm38
MGSCv371170,273,124 - 70,279,701 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361170,275,817 - 70,282,394 (+)NCBIMGSCv36mm8
Celera1178,005,591 - 78,012,164 (+)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1142.99NCBI
Zmynd15
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81055,669,832 - 55,676,446 (+)NCBIGRCr8
mRatBN7.21055,171,198 - 55,177,812 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1055,171,198 - 55,177,812 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1059,850,398 - 59,857,016 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01059,338,908 - 59,345,526 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01054,837,989 - 54,844,607 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01057,064,482 - 57,071,096 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1057,064,482 - 57,071,096 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01056,821,719 - 56,828,333 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41057,300,603 - 57,307,217 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11057,315,229 - 57,320,708 (+)NCBI
Celera1054,317,493 - 54,324,107 (+)NCBICelera
Cytogenetic Map10q24NCBI
Zmynd15
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546710,136,650 - 10,143,652 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546710,136,635 - 10,143,016 (+)NCBIChiLan1.0ChiLan1.0
ZMYND15
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21912,357,387 - 12,365,357 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11714,325,730 - 14,333,701 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0174,795,541 - 4,801,947 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1174,785,740 - 4,791,845 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl174,786,214 - 4,791,760 (+)Ensemblpanpan1.1panPan2
ZMYND15
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1531,811,471 - 31,816,850 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl531,811,471 - 31,816,345 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha531,950,759 - 31,956,137 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0531,916,539 - 31,921,914 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl531,916,539 - 31,921,409 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1531,882,855 - 31,888,233 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0531,842,535 - 31,847,915 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0532,018,768 - 32,024,147 (-)NCBIUU_Cfam_GSD_1.0
Zmynd15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560252,743,822 - 52,749,752 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366773,151,349 - 3,156,553 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366773,151,223 - 3,157,072 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZMYND15
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1252,139,212 - 52,144,981 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11252,139,412 - 52,145,013 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21254,258,513 - 54,264,319 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZMYND15
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1164,219,792 - 4,226,427 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605917,414,584 - 17,421,357 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000011880   ⟹   ENSHGLP00000011752
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247868,594,479 - 8,600,154 (+)Ensembl
RefSeq Acc Id: XM_004857277   ⟹   XP_004857334
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247868,593,815 - 8,600,078 (+)NCBI
RefSeq Acc Id: XM_004857278   ⟹   XP_004857335
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247868,593,815 - 8,600,078 (+)NCBI
RefSeq Acc Id: XM_021238194   ⟹   XP_021093853
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247868,593,888 - 8,600,078 (+)NCBI
RefSeq Acc Id: XM_021238195   ⟹   XP_021093854
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247868,593,815 - 8,600,078 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004857334 (Get FASTA)   NCBI Sequence Viewer  
  XP_004857335 (Get FASTA)   NCBI Sequence Viewer  
  XP_021093853 (Get FASTA)   NCBI Sequence Viewer  
  XP_021093854 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB13565 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000011752
  ENSHGLP00100021684
GenBank Protein JAN97793 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004857334   ⟸   XM_004857277
- Peptide Label: isoform X1
- UniProtKB: A0A0P6J0D5 (UniProtKB/TrEMBL),   G5BWA8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004857335   ⟸   XM_004857278
- Peptide Label: isoform X3
- UniProtKB: G5BWA8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021093854   ⟸   XM_021238195
- Peptide Label: isoform X2
- UniProtKB: G5BWA8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021093853   ⟸   XM_021238194
- Peptide Label: isoform X1
- UniProtKB: A0A0P6J0D5 (UniProtKB/TrEMBL),   G5BWA8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000011752   ⟸   ENSHGLT00000011880


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000008423 Ensembl, ENTREZGENE
  ENSHGLG00100015958 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000011880 ENTREZGENE
  ENSHGLT00100021910 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.2220 UniProtKB/TrEMBL
InterPro Mss51-like_C UniProtKB/TrEMBL
  ZMY15 UniProtKB/TrEMBL
  Znf_MYND UniProtKB/TrEMBL
KEGG Report hgl:101711584 UniProtKB/TrEMBL
NCBI Gene Zmynd15 ENTREZGENE
PANTHER PTHR47085 UniProtKB/TrEMBL
  ZINC FINGER MYND DOMAIN-CONTAINING PROTEIN 15 UniProtKB/TrEMBL
Pfam MSS51_C UniProtKB/TrEMBL
  zf-MYND UniProtKB/TrEMBL
PROSITE ZF_MYND_2 UniProtKB/TrEMBL
Superfamily-SCOP HIT/MYND zinc finger-like UniProtKB/TrEMBL
UniProt A0A0P6J0D5 ENTREZGENE, UniProtKB/TrEMBL
  G5BWA8 ENTREZGENE, UniProtKB/TrEMBL