Zdhhc5 (zinc finger DHHC-type palmitoyltransferase 5) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Zdhhc5 (zinc finger DHHC-type palmitoyltransferase 5) Heterocephalus glaber
Analyze
Symbol: Zdhhc5
Name: zinc finger DHHC-type palmitoyltransferase 5 (Ensembl:zinc finger DHHC-type containing 5)
RGD ID: 18913860
Description: ENCODES a protein that exhibits acyltransferase activity (inferred); palmitoyltransferase activity (inferred); protein-cysteine S-palmitoyltransferase activity (inferred); INVOLVED IN positive regulation of NLRP3 inflammasome complex assembly (ortholog); positive regulation of pattern recognition receptor signaling pathway (ortholog); positive regulation of protein localization to phagocytic vesicle (ortholog); ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); FOUND IN dendrite (ortholog); GABA-ergic synapse (ortholog); glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: palmitoyltransferase ZDHHC5; Putative palmitoyltransferase ZDHHC5; zinc finger DHHC-type containing 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248643,028,170 - 3,048,945 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248643,027,537 - 3,049,567 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Zdhhc5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248643,028,170 - 3,048,945 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248643,027,537 - 3,049,567 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ZDHHC5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381157,668,114 - 57,701,182 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1157,667,747 - 57,701,182 (+)EnsemblGRCh38hg38GRCh38
GRCh371157,435,586 - 57,468,654 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361157,192,050 - 57,225,235 (+)NCBINCBI36Build 36hg18NCBI36
Build 341157,192,049 - 57,225,235NCBI
Celera1154,791,959 - 54,825,136 (+)NCBICelera
Cytogenetic Map11q12.1NCBI
HuRef1153,784,392 - 53,817,583 (+)NCBIHuRef
CHM1_11157,301,682 - 57,335,557 (+)NCBICHM1_1
T2T-CHM13v2.01157,618,060 - 57,651,360 (+)NCBIT2T-CHM13v2.0
Zdhhc5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39284,518,264 - 84,545,508 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl284,518,314 - 84,545,524 (-)EnsemblGRCm39 Ensembl
GRCm38284,687,920 - 84,715,164 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl284,687,970 - 84,715,180 (-)EnsemblGRCm38mm10GRCm38
MGSCv37284,528,077 - 84,555,321 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36284,488,809 - 84,515,874 (-)NCBIMGSCv36mm8
Celera286,282,799 - 86,310,669 (-)NCBICelera
Cytogenetic Map2DNCBI
cM Map249.45NCBI
Zdhhc5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8390,178,734 - 90,206,889 (-)NCBIGRCr8
mRatBN7.2369,772,037 - 69,800,142 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl369,771,890 - 69,799,921 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx373,154,613 - 73,176,955 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0381,753,276 - 81,775,617 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0379,512,207 - 79,534,574 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0372,090,526 - 72,118,406 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl372,091,315 - 72,113,680 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0378,611,961 - 78,634,327 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4367,898,612 - 67,920,978 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera369,128,506 - 69,150,871 (-)NCBICelera
Cytogenetic Map3q24NCBI
Zdhhc5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555112,601,803 - 2,624,151 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555112,597,353 - 2,625,139 (+)NCBIChiLan1.0ChiLan1.0
ZDHHC5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2958,824,177 - 58,857,571 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11159,844,220 - 59,877,535 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01152,908,693 - 52,942,028 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11156,379,608 - 56,413,400 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1156,379,608 - 56,413,400 (+)Ensemblpanpan1.1panPan2
ZDHHC5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11838,497,649 - 38,522,728 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1838,497,657 - 38,517,964 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1838,044,617 - 38,064,569 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01839,179,500 - 39,205,068 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1839,179,502 - 39,204,257 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11838,762,693 - 38,782,852 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01838,335,858 - 38,355,787 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01838,966,391 - 38,986,607 (-)NCBIUU_Cfam_GSD_1.0
Zdhhc5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494714,725,688 - 14,751,558 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365814,839,511 - 4,865,140 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365814,839,511 - 4,865,406 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZDHHC5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl213,250,970 - 13,276,114 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1213,250,967 - 13,276,517 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2212,884,156 - 12,909,278 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZDHHC5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1115,526,735 - 15,560,562 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl115,525,169 - 15,555,405 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038112,877,753 - 112,911,926 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000012688   ⟹   ENSHGLP00000012552
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248643,028,170 - 3,048,945 (-)Ensembl
RefSeq Acc Id: XM_004869769   ⟹   XP_004869826
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248643,027,537 - 3,049,566 (-)NCBI
RefSeq Acc Id: XM_021248285   ⟹   XP_021103944
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248643,027,537 - 3,049,567 (-)NCBI
RefSeq Acc Id: XM_021248286   ⟹   XP_021103945
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248643,027,537 - 3,049,567 (-)NCBI
RefSeq Acc Id: XM_021248287   ⟹   XP_021103946
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248643,027,537 - 3,048,755 (-)NCBI
RefSeq Acc Id: XM_021248288   ⟹   XP_021103947
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248643,027,537 - 3,048,755 (-)NCBI
RefSeq Acc Id: XM_021248289   ⟹   XP_021103948
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248643,027,537 - 3,048,979 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021103944   ⟸   XM_021248285
- Peptide Label: isoform X1
- UniProtKB: G5BLJ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021103945   ⟸   XM_021248286
- Peptide Label: isoform X1
- UniProtKB: G5BLJ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004869826   ⟸   XM_004869769
- Peptide Label: isoform X2
- UniProtKB: G5BLJ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021103948   ⟸   XM_021248289
- Peptide Label: isoform X1
- UniProtKB: G5BLJ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021103947   ⟸   XM_021248288
- Peptide Label: isoform X1
- UniProtKB: G5BLJ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021103946   ⟸   XM_021248287
- Peptide Label: isoform X1
- UniProtKB: G5BLJ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000012552   ⟸   ENSHGLT00000012688


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000008974 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000012688 ENTREZGENE
InterPro Palmitoyltrfase_DHHC UniProtKB/TrEMBL
NCBI Gene Zdhhc5 ENTREZGENE
PANTHER ANKYRIN REPEAT AND LEM DOMAIN-CONTAINING PROTEIN 2 UniProtKB/TrEMBL
  PALMITOYLTRANSFERASE ZDHHC5 UniProtKB/TrEMBL
Pfam DHHC UniProtKB/TrEMBL
PROSITE DHHC UniProtKB/TrEMBL
UniProt G5BLJ8 ENTREZGENE, UniProtKB/TrEMBL