Slco5a1 (solute carrier organic anion transporter family member 5A1) - Rat Genome Database

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Gene: Slco5a1 (solute carrier organic anion transporter family member 5A1) Heterocephalus glaber
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Symbol: Slco5a1
Name: solute carrier organic anion transporter family member 5A1
RGD ID: 18913773
Description: ENCODES a protein that exhibits sodium-independent organic anion transmembrane transporter activity (inferred); transmembrane transporter activity (inferred); INVOLVED IN monoatomic ion transport (inferred); sodium-independent organic anion transport (inferred); transmembrane transport (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474421,341,840 - 21,472,477 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474421,341,670 - 21,477,408 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Slco5a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474421,341,840 - 21,472,477 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474421,341,670 - 21,477,408 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SLCO5A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38869,667,046 - 69,834,978 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl869,667,046 - 69,834,978 (-)EnsemblGRCh38hg38GRCh38
GRCh37870,579,281 - 70,747,213 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36870,747,129 - 70,909,762 (-)NCBINCBI36Build 36hg18NCBI36
Build 34870,747,128 - 70,909,762NCBI
Celera866,582,145 - 66,744,912 (-)NCBICelera
Cytogenetic Map8q13.3NCBI
HuRef866,078,661 - 66,241,442 (-)NCBIHuRef
CHM1_1870,639,975 - 70,802,700 (-)NCBICHM1_1
T2T-CHM13v2.0870,096,700 - 70,264,566 (-)NCBIT2T-CHM13v2.0
Slco5a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39112,936,773 - 13,063,043 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl112,936,773 - 13,062,874 (-)EnsemblGRCm39 Ensembl
GRCm38112,866,549 - 12,992,796 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl112,866,549 - 12,992,650 (-)EnsemblGRCm38mm10GRCm38
MGSCv37112,856,630 - 12,981,216 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36112,863,809 - 12,976,349 (-)NCBIMGSCv36mm8
Celera112,824,337 - 12,949,884 (-)NCBICelera
Cytogenetic Map1A3NCBI
cM Map13.71NCBI
Slco5a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8511,012,001 - 11,141,180 (+)NCBIGRCr8
mRatBN7.256,228,938 - 6,358,124 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl56,228,973 - 6,352,913 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx58,374,006 - 8,496,220 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0510,012,890 - 10,135,101 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.059,708,214 - 9,830,827 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.055,866,362 - 5,994,748 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl55,866,897 - 5,989,667 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0510,704,801 - 10,829,802 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.455,446,597 - 5,571,661 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.155,446,555 - 5,572,105 (+)NCBI
Celera55,806,993 - 5,929,188 (+)NCBICelera
Cytogenetic Map5q11NCBI
SLCO5A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2785,403,658 - 85,564,520 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1861,042,917 - 61,194,622 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0866,202,168 - 66,359,752 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1867,860,134 - 68,019,664 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl867,860,134 - 68,019,757 (-)Ensemblpanpan1.1panPan2
SLCO5A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12918,895,195 - 19,029,385 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2918,895,799 - 19,028,769 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2919,215,735 - 19,353,625 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02918,987,976 - 19,121,514 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2918,987,945 - 19,121,274 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12919,027,513 - 19,165,580 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02919,094,070 - 19,232,078 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02919,374,658 - 19,513,660 (-)NCBIUU_Cfam_GSD_1.0
Slco5a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530360,129,379 - 60,264,043 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649614,521,053 - 14,654,522 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649614,518,855 - 14,654,496 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLCO5A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl465,439,237 - 65,583,213 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1465,439,221 - 65,589,115 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2471,224,074 - 71,249,807 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLCO5A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1865,444,143 - 65,601,242 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl865,446,585 - 65,598,876 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603975,851,045 - 76,022,054 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


RefSeq Acc Id: ENSHGLT00000009873   ⟹   ENSHGLP00000009765
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474421,341,840 - 21,472,477 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000009874   ⟹   ENSHGLP00000009766
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474421,341,928 - 21,471,449 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000009875   ⟹   ENSHGLP00000009767
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474421,341,965 - 21,464,564 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000009876   ⟹   ENSHGLP00000009768
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474421,341,965 - 21,464,237 (+)Ensembl
RefSeq Acc Id: XM_004842068   ⟹   XP_004842125
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474421,341,670 - 21,477,408 (+)NCBI
RefSeq Acc Id: XM_004842069   ⟹   XP_004842126
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474421,341,670 - 21,477,408 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004842125 (Get FASTA)   NCBI Sequence Viewer  
  XP_004842126 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000009765
RefSeq Acc Id: XP_004842125   ⟸   XM_004842068
- Peptide Label: isoform X1
- UniProtKB: G5BGR0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004842126   ⟸   XM_004842069
- Peptide Label: isoform X2
- UniProtKB: G5BGR0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000009765   ⟸   ENSHGLT00000009873
RefSeq Acc Id: ENSHGLP00000009767   ⟸   ENSHGLT00000009875
RefSeq Acc Id: ENSHGLP00000009766   ⟸   ENSHGLT00000009874
RefSeq Acc Id: ENSHGLP00000009768   ⟸   ENSHGLT00000009876


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000007007 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000009873 ENTREZGENE
Gene3D-CATH 3.30.60.30 UniProtKB/TrEMBL
  MFS general substrate transporter like domains UniProtKB/TrEMBL
InterPro Kazal_dom UniProtKB/TrEMBL
  Kazal_dom_sf UniProtKB/TrEMBL
  MFS_dom UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/TrEMBL
  OATP UniProtKB/TrEMBL
NCBI Gene Slco5a1 ENTREZGENE
PANTHER ORGANIC ANION TRANSPORTER UniProtKB/TrEMBL
  SOLUTE CARRIER ORGANIC ANION TRANSPORTER FAMILY MEMBER 5A1 UniProtKB/TrEMBL
Pfam Kazal_2 UniProtKB/TrEMBL
  OATP UniProtKB/TrEMBL
PROSITE KAZAL_2 UniProtKB/TrEMBL
  MFS UniProtKB/TrEMBL
Superfamily-SCOP Kazal-type serine protease inhibitors UniProtKB/TrEMBL
  MFS general substrate transporter UniProtKB/TrEMBL
UniProt G5BGR0 ENTREZGENE, UniProtKB/TrEMBL