Tenm4 (teneurin transmembrane protein 4) - Rat Genome Database

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Gene: Tenm4 (teneurin transmembrane protein 4) Heterocephalus glaber
Analyze
Symbol: Tenm4
Name: teneurin transmembrane protein 4
RGD ID: 18913543
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN cardiac cell fate specification (ortholog); cardiac muscle cell proliferation (ortholog); central nervous system myelin formation (ortholog); ASSOCIATED WITH bipolar disorder (ortholog); cleft palate (ortholog); essential tremor 5 (ortholog); FOUND IN cytoplasm (ortholog); glutamatergic synapse (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Teneurin-4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248631,643,076 - 2,149,630 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248631,643,173 - 2,374,330 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Tenm4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248631,643,076 - 2,149,630 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248631,643,173 - 2,374,330 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
TENM4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381178,652,829 - 79,441,030 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1178,652,829 - 79,441,030 (-)EnsemblGRCh38hg38GRCh38
GRCh371178,363,874 - 79,152,074 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361178,041,976 - 78,200,833 (-)NCBINCBI36Build 36hg18NCBI36
Build 341178,041,976 - 78,090,762NCBI
Celera1175,672,814 - 76,460,814 (-)NCBICelera
Cytogenetic Map11q14.1NCBI
HuRef1174,661,417 - 75,448,039 (-)NCBIHuRef
CHM1_11178,247,331 - 79,034,525 (-)NCBICHM1_1
T2T-CHM13v2.01178,586,105 - 79,375,273 (-)NCBIT2T-CHM13v2.0
Tenm4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39795,550,262 - 96,560,300 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl795,820,453 - 96,560,300 (+)EnsemblGRCm39 Ensembl
GRCm38796,171,244 - 96,911,093 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl796,171,246 - 96,911,093 (+)EnsemblGRCm38mm10GRCm38
MGSCv377103,359,147 - 104,057,064 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36796,046,438 - 96,782,444 (+)NCBIMGSCv36mm8
MGSCv36785,907,725 - 86,643,173 (+)NCBIMGSCv36mm8
Celera794,700,659 - 94,907,583 (+)NCBICelera
Cytogenetic Map7E1NCBI
cM Map752.53NCBI
Tenm4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81157,699,611 - 160,674,549 (+)NCBIGRCr8
mRatBN7.21149,895,097 - 151,263,315 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1150,780,381 - 151,259,144 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1158,546,622 - 159,246,439 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01165,726,784 - 166,426,618 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01158,600,249 - 159,300,098 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01161,183,858 - 161,885,094 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1161,401,527 - 161,880,923 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01167,398,579 - 168,098,526 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41153,661,907 - 154,172,817 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11153,887,034 - 154,251,205 (+)NCBI
Celera1148,886,384 - 149,364,243 (+)NCBICelera
Cytogenetic Map1q32NCBI
Tenm4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541412,867,974 - 13,364,580 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541412,649,128 - 13,364,523 (+)NCBIChiLan1.0ChiLan1.0
TENM4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2979,585,890 - 82,588,852 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11180,629,711 - 81,413,847 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01173,712,808 - 75,001,831 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11177,333,644 - 78,113,322 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1177,338,422 - 77,743,909 (-)Ensemblpanpan1.1panPan2
TENM4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12117,819,846 - 20,234,096 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2119,732,991 - 20,230,305 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2119,397,551 - 20,128,989 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02119,698,863 - 20,436,994 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2119,932,722 - 20,432,290 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12119,484,108 - 20,214,667 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02119,698,080 - 20,429,003 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02119,623,353 - 20,352,628 (+)NCBIUU_Cfam_GSD_1.0
Tenm4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494765,545,901 - 66,294,616 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364987,145,483 - 7,658,860 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364987,145,510 - 7,868,792 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TENM4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl913,045,196 - 13,820,420 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1913,040,615 - 13,826,957 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2914,324,407 - 14,402,233 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TENM4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1169,864,570 - 70,450,485 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl169,869,359 - 70,110,710 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604352,836,270 - 55,860,773 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021248258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021248259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021248260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021248261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021248262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021248263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01093542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01093543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01093544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01093545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01093546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01093547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01093548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01093549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01093550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01093551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01093552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01093553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01093554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01093555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01093556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH169811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000005741   ⟹   ENSHGLP00000005669
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248631,643,076 - 2,149,630 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000005742   ⟹   ENSHGLP00000005670
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248631,643,076 - 2,097,564 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000005743   ⟹   ENSHGLP00000005671
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248631,643,076 - 2,097,564 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000005744   ⟹   ENSHGLP00000005672
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248631,647,791 - 2,149,405 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000005745   ⟹   ENSHGLP00000005673
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248631,647,791 - 2,149,405 (-)Ensembl
RefSeq Acc Id: XM_021248258   ⟹   XP_021103917
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248631,643,173 - 2,372,459 (-)NCBI
RefSeq Acc Id: XM_021248259   ⟹   XP_021103918
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248631,647,791 - 2,374,330 (-)NCBI
RefSeq Acc Id: XM_021248260   ⟹   XP_021103919
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248631,647,791 - 2,374,330 (-)NCBI
RefSeq Acc Id: XM_021248261   ⟹   XP_021103920
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248631,643,173 - 2,372,459 (-)NCBI
RefSeq Acc Id: XM_021248262   ⟹   XP_021103921
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248631,643,173 - 2,097,266 (-)NCBI
RefSeq Acc Id: XM_021248263   ⟹   XP_021103922
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248631,643,173 - 2,042,801 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021103920   ⟸   XM_021248261
- Peptide Label: isoform X4
- UniProtKB: G5BEF2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021103917   ⟸   XM_021248258
- Peptide Label: isoform X1
- UniProtKB: G5BEF2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021103921   ⟸   XM_021248262
- Peptide Label: isoform X4
- UniProtKB: G5BEF2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021103922   ⟸   XM_021248263
- Peptide Label: isoform X4
- UniProtKB: G5BEF2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021103919   ⟸   XM_021248260
- Peptide Label: isoform X3
- UniProtKB: G5BEF2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021103918   ⟸   XM_021248259
- Peptide Label: isoform X2
- UniProtKB: G5BEF2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000005669   ⟸   ENSHGLT00000005741
RefSeq Acc Id: ENSHGLP00000005670   ⟸   ENSHGLT00000005742
RefSeq Acc Id: ENSHGLP00000005673   ⟸   ENSHGLT00000005745
RefSeq Acc Id: ENSHGLP00000005672   ⟸   ENSHGLT00000005744
RefSeq Acc Id: ENSHGLP00000005671   ⟸   ENSHGLT00000005743


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000004145 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000005742 ENTREZGENE
  ENSHGLT00000005744 ENTREZGENE
Gene3D-CATH Laminin UniProtKB/TrEMBL
  RHS repeat-associated core UniProtKB/TrEMBL
  TolB, C-terminal domain UniProtKB/TrEMBL
InterPro 6-blade_b-propeller_TolB-like UniProtKB/TrEMBL
  CarboxyPept-like_regulatory UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  EGF_extracell UniProtKB/TrEMBL
  IPR006530 UniProtKB/TrEMBL
  Rhs_assc_core UniProtKB/TrEMBL
  RHS_repeat UniProtKB/TrEMBL
  Ten_N UniProtKB/TrEMBL
  Tox-GHH_dom UniProtKB/TrEMBL
NCBI Gene Tenm4 ENTREZGENE
PANTHER TENEURIN AND N-ACETYLGLUCOSAMINE-1-PHOSPHODIESTER ALPHA-N-ACETYLGLUCOSAMINIDASE UniProtKB/TrEMBL
  TENEURIN-4 UniProtKB/TrEMBL
Pfam EGF_2 UniProtKB/TrEMBL
  RHS_repeat UniProtKB/TrEMBL
  Ten_N UniProtKB/TrEMBL
  Tox-GHH UniProtKB/TrEMBL
PROSITE EGF_1 UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  TENEURIN_N UniProtKB/TrEMBL
SMART EGF UniProtKB/TrEMBL
Superfamily-SCOP Calcium-dependent phosphotriesterase UniProtKB/TrEMBL
  Carboxypeptidase regulatory domain-like UniProtKB/TrEMBL
  EGF/Laminin UniProtKB/TrEMBL
  NHL repeat UniProtKB/TrEMBL
UniProt G5BEF2 ENTREZGENE, UniProtKB/TrEMBL