Creld1 (cysteine rich with EGF like domains 1) - Rat Genome Database

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Gene: Creld1 (cysteine rich with EGF like domains 1) Heterocephalus glaber
Analyze
Symbol: Creld1
Name: cysteine rich with EGF like domains 1
RGD ID: 18913491
Description: ENCODES a protein that exhibits calcium ion binding (inferred); isomerase activity (inferred); protein disulfide isomerase activity (inferred); ASSOCIATED WITH Atrioventricular Septal Defect 2 (ortholog); Candidiasis, Familial, 9 (ortholog); Congenital Heart Defects, Multiple Types, 4 (ortholog); FOUND IN glutamatergic synapse (ortholog); synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cysteine-rich with EGF-like domain protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247314,537,089 - 4,544,256 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247314,537,073 - 4,544,256 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Creld1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247314,537,089 - 4,544,256 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247314,537,073 - 4,544,256 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CRELD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3839,933,834 - 9,945,406 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl39,933,793 - 9,945,413 (+)EnsemblGRCh38hg38GRCh38
GRCh3739,975,518 - 9,987,090 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3639,950,506 - 9,962,090 (+)NCBINCBI36Build 36hg18NCBI36
Build 3439,950,789 - 9,961,712NCBI
Celera39,910,976 - 9,922,541 (+)NCBICelera
Cytogenetic Map3p25.3NCBI
HuRef39,911,848 - 9,923,428 (+)NCBIHuRef
CHM1_139,925,647 - 9,937,249 (+)NCBICHM1_1
T2T-CHM13v2.039,925,824 - 9,937,392 (+)NCBIT2T-CHM13v2.0
Creld1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396113,460,317 - 113,470,304 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6113,460,258 - 113,470,304 (+)EnsemblGRCm39 Ensembl
GRCm386113,483,356 - 113,493,343 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6113,483,297 - 113,493,343 (+)EnsemblGRCm38mm10GRCm38
MGSCv376113,433,563 - 113,443,332 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366113,449,346 - 113,459,115 (+)NCBIMGSCv36mm8
Celera6115,310,530 - 115,320,300 (+)NCBICelera
Cytogenetic Map6E3NCBI
cM Map652.77NCBI
Creld1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84148,187,510 - 148,197,120 (+)NCBIGRCr8
mRatBN7.24146,631,883 - 146,641,493 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4146,631,883 - 146,641,499 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4152,015,833 - 152,025,441 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04147,796,674 - 147,806,282 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04146,418,959 - 146,428,548 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04145,440,284 - 145,449,894 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4145,440,114 - 145,449,892 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04208,737,312 - 208,747,193 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44149,375,373 - 149,384,983 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14149,620,213 - 149,629,820 (+)NCBI
Celera4135,187,799 - 135,197,409 (+)NCBICelera
Cytogenetic Map4q42NCBI
Creld1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555611,423,405 - 1,433,314 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555611,423,229 - 1,430,679 (+)NCBIChiLan1.0ChiLan1.0
CRELD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v229,937,799 - 9,949,353 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan139,942,600 - 9,954,112 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v039,878,265 - 9,889,826 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1310,226,983 - 10,238,210 (+)NCBIpanpan1.1PanPan1.1panPan2
CRELD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1208,333,911 - 8,342,429 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha208,367,586 - 8,376,111 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0208,363,188 - 8,371,703 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl208,363,188 - 8,371,683 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1208,085,492 - 8,094,013 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0208,430,988 - 8,439,523 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0208,404,093 - 8,412,604 (-)NCBIUU_Cfam_GSD_1.0
Creld1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494215,642,488 - 15,651,683 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366023,255,227 - 3,267,187 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366023,258,029 - 3,267,231 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CRELD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1366,194,865 - 66,203,412 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11366,194,795 - 66,203,419 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21373,270,629 - 73,279,262 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CRELD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12245,960,253 - 45,969,973 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2245,961,010 - 45,969,712 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041120,593,174 - 120,602,789 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000027729   ⟹   ENSHGLP00000027486
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247314,537,089 - 4,544,256 (+)Ensembl
RefSeq Acc Id: XM_004835313   ⟹   XP_004835370
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247314,537,074 - 4,544,256 (+)NCBI
RefSeq Acc Id: XM_004835314   ⟹   XP_004835371
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247314,537,074 - 4,544,256 (+)NCBI
RefSeq Acc Id: XM_004835315   ⟹   XP_004835372
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247314,537,075 - 4,544,256 (+)NCBI
RefSeq Acc Id: XM_021260486   ⟹   XP_021116145
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247314,537,073 - 4,544,256 (+)NCBI
RefSeq Acc Id: XM_021260489   ⟹   XP_021116148
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247314,537,074 - 4,544,256 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004835370 (Get FASTA)   NCBI Sequence Viewer  
  XP_004835371 (Get FASTA)   NCBI Sequence Viewer  
  XP_004835372 (Get FASTA)   NCBI Sequence Viewer  
  XP_021116145 (Get FASTA)   NCBI Sequence Viewer  
  XP_021116148 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000027486
GenBank Protein JAO00944 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021116145   ⟸   XM_021260486
- Peptide Label: isoform X3
- UniProtKB: A0A0P6K648 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004835370   ⟸   XM_004835313
- Peptide Label: isoform X1
- UniProtKB: A0A0P6K648 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021116148   ⟸   XM_021260489
- Peptide Label: isoform X4
- UniProtKB: A0A0P6K648 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004835371   ⟸   XM_004835314
- Peptide Label: isoform X1
- UniProtKB: A0A0P6K648 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004835372   ⟸   XM_004835315
- Peptide Label: isoform X2
- UniProtKB: A0A0P6K648 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000027486   ⟸   ENSHGLT00000027729


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000019547 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000027729 ENTREZGENE
Gene3D-CATH Laminin UniProtKB/TrEMBL
InterPro DUF3456 UniProtKB/TrEMBL
  EGF-like_Ca-bd_dom UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  EGF-type_Asp/Asn_hydroxyl_site UniProtKB/TrEMBL
  EGF_Ca-bd_CS UniProtKB/TrEMBL
  Furin_repeat UniProtKB/TrEMBL
  Growth_fac_rcpt_cys_sf UniProtKB/TrEMBL
  Laminin_EGF UniProtKB/TrEMBL
NCBI Gene Creld1 ENTREZGENE
PANTHER PROTEIN DISULFIDE-ISOMERASE UniProtKB/TrEMBL
  STABILIN UniProtKB/TrEMBL
Pfam DUF3456 UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
PROSITE ASX_HYDROXYL UniProtKB/TrEMBL
  EGF_1 UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  EGF_LAM_1 UniProtKB/TrEMBL
SMART EGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  SM00261 UniProtKB/TrEMBL
Superfamily-SCOP SSF57184 UniProtKB/TrEMBL
UniProt A0A0P6K648 ENTREZGENE, UniProtKB/TrEMBL