Elf5 (E74 like ETS transcription factor 5) - Rat Genome Database

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Gene: Elf5 (E74 like ETS transcription factor 5) Heterocephalus glaber
Analyze
Symbol: Elf5
Name: E74 like ETS transcription factor 5
RGD ID: 18913489
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN ectoderm development (ortholog); ectodermal cell fate commitment (ortholog); mammary gland epithelial cell differentiation (ortholog); ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ETS-related transcription factor Elf-5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476712,649,643 - 12,675,711 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476712,648,420 - 12,675,727 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Elf5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476712,649,643 - 12,675,711 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476712,648,420 - 12,675,727 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ELF5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381134,478,791 - 34,513,794 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1134,478,791 - 34,525,193 (-)EnsemblGRCh38hg38GRCh38
GRCh371134,500,338 - 34,535,341 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361134,456,918 - 34,491,906 (-)NCBINCBI36Build 36hg18NCBI36
Build 341134,456,917 - 34,489,922NCBI
Celera1134,647,528 - 34,682,543 (-)NCBICelera
Cytogenetic Map11p13NCBI
HuRef1134,197,704 - 34,232,735 (-)NCBIHuRef
CHM1_11134,499,338 - 34,534,346 (-)NCBICHM1_1
T2T-CHM13v2.01134,615,634 - 34,650,642 (-)NCBIT2T-CHM13v2.0
Elf5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392103,242,443 - 103,281,334 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2103,242,033 - 103,281,334 (+)EnsemblGRCm39 Ensembl
GRCm382103,412,098 - 103,450,989 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2103,411,688 - 103,450,989 (+)EnsemblGRCm38mm10GRCm38
MGSCv372103,252,255 - 103,291,146 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362103,224,916 - 103,251,824 (+)NCBIMGSCv36mm8
Celera2104,658,179 - 104,697,597 (+)NCBICelera
Cytogenetic Map2E2NCBI
cM Map254.43NCBI
Elf5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83110,264,460 - 110,291,926 (+)NCBIGRCr8
mRatBN7.2389,808,837 - 89,836,977 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl389,797,880 - 89,836,973 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx393,303,076 - 93,330,417 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03101,902,134 - 101,929,483 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0399,732,989 - 99,760,479 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0393,333,514 - 93,374,454 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl393,351,619 - 93,371,656 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0399,988,281 - 100,016,439 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4388,691,632 - 88,720,167 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1388,589,258 - 88,616,545 (-)NCBI
Celera388,877,696 - 88,905,823 (+)NCBICelera
Cytogenetic Map3q32NCBI
Elf5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542211,750,774 - 11,780,310 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542211,751,073 - 11,779,313 (+)NCBIChiLan1.0ChiLan1.0
ELF5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2936,701,083 - 36,734,109 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11136,705,954 - 36,738,909 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01134,453,550 - 34,486,519 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11134,329,889 - 34,364,852 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1134,329,889 - 34,362,770 (-)Ensemblpanpan1.1panPan2
ELF5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11833,342,962 - 33,376,012 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1833,332,324 - 33,374,828 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1832,948,821 - 32,981,834 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01833,953,670 - 33,986,711 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1833,942,913 - 33,986,698 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11833,513,404 - 33,546,418 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01833,105,247 - 33,138,256 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01833,740,636 - 33,773,663 (+)NCBIUU_Cfam_GSD_1.0
Elf5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494730,444,654 - 30,471,208 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365333,569,452 - 3,596,004 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365333,569,435 - 3,595,991 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ELF5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl226,443,977 - 26,485,903 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1226,443,979 - 26,486,802 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2228,811,152 - 28,852,566 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ELF5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1130,746,054 - 30,785,670 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666038127,867,510 - 127,896,312 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000015573   ⟹   ENSHGLP00000015413
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476712,649,643 - 12,675,711 (+)Ensembl
RefSeq Acc Id: XM_004852056   ⟹   XP_004852113
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476712,650,298 - 12,675,727 (+)NCBI
RefSeq Acc Id: XM_004852057   ⟹   XP_004852114
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476712,648,420 - 12,675,727 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004852113 (Get FASTA)   NCBI Sequence Viewer  
  XP_004852114 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000015413
  ENSHGLP00100017071
GenBank Protein JAN99995 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004852114   ⟸   XM_004852057
- Peptide Label: isoform X1
RefSeq Acc Id: XP_004852113   ⟸   XM_004852056
- Peptide Label: isoform X2
- UniProtKB: A0A0P6JVV1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000015413   ⟸   ENSHGLT00000015573


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000011019 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLG00100012586 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000015573 ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLT00100017254 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
  1.10.150.50 UniProtKB/TrEMBL
InterPro Ets_dom UniProtKB/TrEMBL
  ETS_fam UniProtKB/TrEMBL
  Pointed_dom UniProtKB/TrEMBL
  SAM/pointed_sf UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/TrEMBL
NCBI Gene Elf5 ENTREZGENE
PANTHER PTHR11849 UniProtKB/TrEMBL
  PTHR11849:SF15 UniProtKB/TrEMBL
Pfam Ets UniProtKB/TrEMBL
  SAM_PNT UniProtKB/TrEMBL
PRINTS ETSDOMAIN UniProtKB/TrEMBL
PROSITE ETS_DOMAIN_2 UniProtKB/TrEMBL
  ETS_DOMAIN_3 UniProtKB/TrEMBL
  PNT UniProtKB/TrEMBL
SMART ETS UniProtKB/TrEMBL
  SAM_PNT UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/TrEMBL
  SSF47769 UniProtKB/TrEMBL
UniProt A0A0P6JVV1 ENTREZGENE, UniProtKB/TrEMBL