Slc35f5 (solute carrier family 35 member F5) - Rat Genome Database

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Gene: Slc35f5 (solute carrier family 35 member F5) Heterocephalus glaber
Analyze
Symbol: Slc35f5
Name: solute carrier family 35 member F5
RGD ID: 18913456
Description: ASSOCIATED WITH genetic disease (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473231,612,410 - 31,647,984 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473231,612,438 - 31,648,984 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Slc35f5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473231,612,410 - 31,647,984 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473231,612,438 - 31,648,984 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SLC35F5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382113,702,682 - 113,756,642 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2113,705,011 - 113,756,693 (-)EnsemblGRCh38hg38GRCh38
GRCh372114,464,286 - 114,514,219 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362114,188,400 - 114,244,975 (-)NCBINCBI36Build 36hg18NCBI36
Build 342114,188,162 - 114,230,630NCBI
Celera2107,786,371 - 107,828,842 (-)NCBICelera
Cytogenetic Map2q14.1NCBI
HuRef2106,788,155 - 106,830,612 (-)NCBIHuRef
CHM1_12114,475,477 - 114,517,976 (-)NCBICHM1_1
T2T-CHM13v2.02114,127,410 - 114,181,350 (-)NCBIT2T-CHM13v2.0
Slc35f5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391125,488,275 - 125,523,571 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1125,488,332 - 125,523,557 (+)EnsemblGRCm39 Ensembl
GRCm381125,560,528 - 125,595,834 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1125,560,595 - 125,595,820 (+)EnsemblGRCm38mm10GRCm38
MGSCv371127,457,593 - 127,492,261 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361127,388,582 - 127,423,361 (+)NCBIMGSCv36mm8
Celera1128,217,517 - 128,253,989 (+)NCBICelera
Cytogenetic Map1E2.3NCBI
cM Map154.7NCBI
Slc35f5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81339,544,253 - 39,581,210 (+)NCBIGRCr8
mRatBN7.21336,992,118 - 37,028,549 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1336,992,205 - 37,028,538 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1339,592,245 - 39,628,215 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01340,880,255 - 40,916,229 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01338,139,269 - 38,175,493 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01341,882,733 - 41,922,358 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1341,883,137 - 41,922,339 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01346,994,193 - 47,034,025 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41338,057,106 - 38,093,225 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11338,071,151 - 38,107,243 (+)NCBI
Celera1336,796,250 - 36,832,062 (+)NCBICelera
Cytogenetic Map13q12NCBI
Slc35f5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545915,407,076 - 15,440,536 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545915,407,686 - 15,440,536 (+)NCBIChiLan1.0ChiLan1.0
SLC35F5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21315,688,521 - 15,805,290 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B15,706,727 - 15,753,457 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B643,864 - 687,490 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B114,188,432 - 114,232,159 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B114,192,967 - 114,231,750 (-)Ensemblpanpan1.1panPan2
SLC35F5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11935,265,879 - 35,304,393 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1935,265,661 - 35,301,332 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1935,497,322 - 35,536,083 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01936,700,804 - 36,739,752 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11935,348,509 - 35,387,388 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01935,509,823 - 35,548,559 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01936,729,464 - 36,768,244 (+)NCBIUU_Cfam_GSD_1.0
Slc35f5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530385,738,498 - 85,792,561 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646955,825,552 - 55,858,516 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646955,824,332 - 55,879,238 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC35F5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1519,936,402 - 19,971,692 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11519,924,437 - 19,971,767 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21522,547,528 - 22,594,753 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC35F5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11016,514,145 - 16,557,773 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1016,514,313 - 16,552,177 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660615,988,244 - 6,031,837 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000011672   ⟹   ENSHGLP00000011545
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473231,612,410 - 31,647,984 (+)Ensembl
RefSeq Acc Id: XM_004836094   ⟹   XP_004836151
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473231,612,447 - 31,648,984 (+)NCBI
RefSeq Acc Id: XM_021236758   ⟹   XP_021092417
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473231,612,446 - 31,648,984 (+)NCBI
RefSeq Acc Id: XM_021236759   ⟹   XP_021092418
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473231,612,438 - 31,628,189 (+)NCBI
RefSeq Acc Id: XR_002386344
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473231,612,443 - 31,635,133 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004836151 (Get FASTA)   NCBI Sequence Viewer  
  XP_021092417 (Get FASTA)   NCBI Sequence Viewer  
  XP_021092418 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000011545
Reference Protein Sequences
RefSeq Acc Id: XP_021092418   ⟸   XM_021236759
- Peptide Label: isoform X3
RefSeq Acc Id: XP_021092417   ⟸   XM_021236758
- Peptide Label: isoform X2
- UniProtKB: G5BU57 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004836151   ⟸   XM_004836094
- Peptide Label: isoform X1
- UniProtKB: G5BU57 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000011545   ⟸   ENSHGLT00000011672


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000008278 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000011672 ENTREZGENE
InterPro EamA_dom UniProtKB/TrEMBL
NCBI Gene Slc35f5 ENTREZGENE
PANTHER SOLUTE CARRIER FAMILY 35 MEMBER F5 UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 35, MEMBER F5 UniProtKB/TrEMBL
Pfam EamA UniProtKB/TrEMBL
Superfamily-SCOP Multidrug resistance efflux transporter EmrE UniProtKB/TrEMBL
UniProt G5BU57 ENTREZGENE, UniProtKB/TrEMBL