Trappc2 (trafficking protein particle complex subunit 2) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Trappc2 (trafficking protein particle complex subunit 2) Heterocephalus glaber
Analyze
Symbol: Trappc2
Name: trafficking protein particle complex subunit 2
RGD ID: 18913430
Description: ENCODES a protein that exhibits transcription corepressor binding (ortholog); transcription regulator inhibitor activity (ortholog); transmembrane transporter binding (ortholog); INVOLVED IN positive regulation of gene expression (ortholog); skeletal system development (ortholog); ASSOCIATED WITH autistic disorder (ortholog); connective tissue disease (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum (ortholog); intracellular membrane-bounded organelle (ortholog); nuclear outer membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: trafficking protein particle complex 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624882417,101 - 431,170 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Trappc2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624882417,101 - 431,170 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
TRAPPC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X13,712,245 - 13,734,620 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX13,712,244 - 13,734,635 (-)EnsemblGRCh38hg38GRCh38
GRCh37X13,730,364 - 13,752,739 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X13,640,282 - 13,662,648 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X13,490,017 - 13,512,384NCBI
CeleraX17,847,442 - 17,869,835 (-)NCBICelera
Cytogenetic MapXp22.2NCBI
HuRefX11,488,878 - 11,510,859 (-)NCBIHuRef
CHM1_1X13,761,181 - 13,783,572 (-)NCBICHM1_1
T2T-CHM13v2.0X13,293,643 - 13,316,052 (-)NCBIT2T-CHM13v2.0
Trappc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X165,223,747 - 165,236,136 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX165,223,570 - 165,236,136 (+)EnsemblGRCm39 Ensembl
GRCm38X166,440,702 - 166,453,140 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX166,440,574 - 166,453,140 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X162,878,757 - 162,890,475 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X161,784,906 - 161,797,243 (+)NCBIMGSCv36mm8
CeleraX149,620,616 - 149,632,365 (+)NCBICelera
Cytogenetic MapXF5NCBI
cM MapX77.43NCBI
Trappc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X31,617,107 - 31,647,035 (-)NCBIGRCr8
mRatBN7.2X28,004,051 - 28,015,336 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX27,994,054 - 28,015,346 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX29,038,597 - 29,049,838 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X32,473,731 - 32,484,938 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X28,653,239 - 28,664,478 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X29,550,871 - 29,562,135 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX29,550,873 - 29,556,610 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X29,944,161 - 29,955,426 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X48,690,381 - 48,701,588 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X48,743,851 - 48,755,057 (-)NCBI
CeleraX28,376,813 - 28,388,017 (-)NCBICelera
Cytogenetic MapXq13NCBI
Trappc2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555194,470,906 - 4,485,969 (+)NCBIChiLan1.0ChiLan1.0
TRAPPC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X15,491,829 - 15,513,861 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X15,495,495 - 15,517,527 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X6,321,264 - 6,341,650 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X13,609,852 - 13,629,926 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX13,609,852 - 13,629,916 (-)Ensemblpanpan1.1panPan2
LOC480840
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X10,128,169 - 10,140,386 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX10,128,849 - 10,140,351 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX10,104,804 - 10,108,924 (-)NCBIDog10K_Boxer_Tasha
Trappc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X3,278,413 - 3,292,930 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364703,278,415 - 3,292,905 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRAPPC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX10,353,419 - 10,366,106 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X10,353,417 - 10,366,095 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X11,307,155 - 11,319,835 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TRAPPC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X12,206,192 - 12,222,303 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX12,206,289 - 12,211,834 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605614,020,889 - 14,039,703 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004870995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01098513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_004870995   ⟹   XP_004871052
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624882417,101 - 431,170 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004871052 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000003350
RefSeq Acc Id: XP_004871052   ⟸   XM_004870995


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000002471 ENTREZGENE
Ensembl Transcript ENSHGLT00000003405 ENTREZGENE
NCBI Gene Trappc2 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-02-16 Trappc2  trafficking protein particle complex subunit 2  Trappc2  trafficking protein particle complex 2  Symbol and/or name change 5135510 APPROVED