Tmem98 (transmembrane protein 98) - Rat Genome Database

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Gene: Tmem98 (transmembrane protein 98) Heterocephalus glaber
Analyze
Symbol: Tmem98
Name: transmembrane protein 98
RGD ID: 18913419
Description: INVOLVED IN negative regulation of myelination (inferred); negative regulation of oligodendrocyte differentiation (inferred); negative regulation of protein localization to nucleus (inferred); ASSOCIATED WITH genetic disease (ortholog); Nanophthalmos 4 (ortholog); FOUND IN endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred); extracellular exosome (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624875909,017 - 920,823 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624875909,040 - 920,826 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Tmem98
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624875909,017 - 920,823 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624875909,040 - 920,826 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
TMEM98
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381732,928,153 - 32,944,315 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1732,927,910 - 32,945,106 (+)EnsemblGRCh38hg38GRCh38
GRCh371731,255,171 - 31,271,333 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361728,279,041 - 28,292,780 (+)NCBINCBI36Build 36hg18NCBI36
Celera1728,165,912 - 28,179,653 (+)NCBICelera
Cytogenetic Map17q11.2NCBI
HuRef1727,440,387 - 27,454,132 (+)NCBIHuRef
CHM1_11731,318,008 - 31,331,755 (+)NCBICHM1_1
T2T-CHM13v2.01733,874,221 - 33,890,387 (+)NCBIT2T-CHM13v2.0
Tmem98
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391180,701,192 - 80,712,859 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1180,701,001 - 80,712,859 (+)EnsemblGRCm39 Ensembl
GRCm381180,810,366 - 80,822,033 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1180,810,175 - 80,822,033 (+)EnsemblGRCm38mm10GRCm38
MGSCv371180,623,917 - 80,635,535 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361180,626,610 - 80,638,228 (+)NCBIMGSCv36mm8
Celera1190,449,693 - 90,461,311 (+)NCBICelera
Cytogenetic Map11B5NCBI
Tmem98
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81066,293,895 - 66,304,806 (+)NCBIGRCr8
mRatBN7.21065,796,173 - 65,807,082 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1065,796,145 - 65,807,079 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1070,424,184 - 70,435,091 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01069,929,500 - 69,940,415 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01065,390,694 - 65,401,666 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01068,173,380 - 68,184,289 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1068,173,369 - 68,184,320 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01067,842,260 - 67,853,169 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41069,028,338 - 69,039,247 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11069,041,960 - 69,052,867 (+)NCBI
Celera1064,753,814 - 64,764,725 (+)NCBICelera
Cytogenetic Map10q26NCBI
Tmem98
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554817,785,967 - 7,798,575 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554817,788,066 - 7,797,433 (+)NCBIChiLan1.0ChiLan1.0
TMEM98
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21931,525,522 - 31,538,994 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11733,406,671 - 33,420,130 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01723,844,747 - 23,858,390 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11724,136,588 - 24,146,912 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1724,133,357 - 24,146,912 (-)Ensemblpanpan1.1panPan2
TMEM98
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1940,130,421 - 40,144,120 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl940,128,885 - 40,144,181 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha939,289,554 - 39,303,300 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0940,946,407 - 40,960,152 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl940,944,876 - 40,960,389 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1939,732,288 - 39,746,021 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0940,026,591 - 40,040,523 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0940,101,547 - 40,115,291 (-)NCBIUU_Cfam_GSD_1.0
Tmem98
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560239,187,718 - 39,196,760 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365382,064,696 - 2,074,730 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365382,065,663 - 2,074,678 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM98
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1242,083,553 - 42,100,494 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11242,087,691 - 42,101,152 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21243,758,973 - 43,771,672 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM98
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11626,468,148 - 26,481,681 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1626,468,419 - 26,481,025 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660753,558,456 - 3,571,948 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000022455   ⟹   ENSHGLP00000022244
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624875909,017 - 920,823 (+)Ensembl
RefSeq Acc Id: XM_004870608   ⟹   XP_004870665
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624875909,044 - 920,826 (+)NCBI
RefSeq Acc Id: XM_004870609   ⟹   XP_004870666
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624875909,040 - 920,209 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004870665 (Get FASTA)   NCBI Sequence Viewer  
  XP_004870666 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000022244
  ENSHGLP00100010757
GenBank Protein JAO03163 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004870666   ⟸   XM_004870609
- UniProtKB: A0A0P6JID2 (UniProtKB/TrEMBL),   G5BIN9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004870665   ⟸   XM_004870608
- UniProtKB: A0A0P6JID2 (UniProtKB/TrEMBL),   G5BIN9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000022244   ⟸   ENSHGLT00000022455


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000015858 Ensembl, ENTREZGENE
  ENSHGLG00100007990 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000022455 ENTREZGENE
  ENSHGLT00100010883 UniProtKB/TrEMBL
Gene3D-CATH I/LWEQ domain UniProtKB/TrEMBL
InterPro TMEM98 UniProtKB/TrEMBL
KEGG Report hgl:101726270 UniProtKB/TrEMBL
NCBI Gene Tmem98 ENTREZGENE
PANTHER PTHR32510 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 98 UniProtKB/TrEMBL
UniProt A0A0P6JID2 ENTREZGENE, UniProtKB/TrEMBL
  G5BIN9 ENTREZGENE, UniProtKB/TrEMBL