Fbxo42 (F-box protein 42) - Rat Genome Database

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Gene: Fbxo42 (F-box protein 42) Heterocephalus glaber
Analyze
Symbol: Fbxo42
Name: F-box protein 42
RGD ID: 18913409
Description: ENCODES a protein that exhibits ubiquitin-like ligase-substrate adaptor activity (inferred); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); genetic disease (ortholog); FOUND IN SCF ubiquitin ligase complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: F-box only protein 42
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247642,368,251 - 2,466,298 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247642,368,251 - 2,465,867 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074  


Genomics

Comparative Map Data
Fbxo42
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247642,368,251 - 2,466,298 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247642,368,251 - 2,465,867 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
FBXO42
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38116,246,840 - 16,352,480 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl116,246,840 - 16,352,480 (-)EnsemblGRCh38hg38GRCh38
GRCh37116,573,335 - 16,678,975 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36116,449,146 - 16,551,535 (-)NCBINCBI36Build 36hg18NCBI36
Build 34116,321,865 - 16,424,254NCBI
Celera115,056,452 - 15,158,874 (-)NCBICelera
Cytogenetic Map1p36.13NCBI
HuRef115,093,755 - 15,196,329 (-)NCBIHuRef
CHM1_1116,375,153 - 16,477,623 (-)NCBICHM1_1
T2T-CHM13v2.0115,688,176 - 15,793,999 (-)NCBIT2T-CHM13v2.0
Fbxo42
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394140,875,216 - 140,931,373 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4140,875,224 - 140,931,373 (+)EnsemblGRCm39 Ensembl
GRCm384141,147,922 - 141,204,062 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4141,147,913 - 141,204,062 (+)EnsemblGRCm38mm10GRCm38
MGSCv374140,703,837 - 140,759,977 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364140,420,007 - 140,476,138 (+)NCBIMGSCv36mm8
Celera4142,955,099 - 143,012,796 (+)NCBICelera
Cytogenetic Map4D3NCBI
cM Map473.41NCBI
Fbxo42
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85158,734,165 - 158,792,560 (+)NCBIGRCr8
mRatBN7.25153,451,162 - 153,509,564 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5153,451,153 - 153,506,342 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5156,139,864 - 156,198,142 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05157,913,137 - 157,971,419 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05157,902,324 - 157,960,606 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05159,670,662 - 159,729,070 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5159,670,662 - 159,729,064 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05163,382,899 - 163,444,733 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45160,005,496 - 160,061,687 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15160,015,781 - 160,072,342 (+)NCBI
Celera5151,815,504 - 151,870,636 (+)NCBICelera
Cytogenetic Map5q36NCBI
Fbxo42
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555271,967,232 - 2,049,524 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555271,967,232 - 2,049,524 (+)NCBIChiLan1.0ChiLan1.0
FBXO42
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21210,568,617 - 210,674,961 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11209,817,242 - 209,923,531 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0115,383,505 - 15,489,800 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1116,375,319 - 16,481,012 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl116,375,319 - 16,481,012 (-)Ensemblpanpan1.1panPan2
FBXO42
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1281,358,204 - 81,460,603 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl281,358,212 - 81,456,916 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha277,894,110 - 77,996,832 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0282,003,981 - 82,105,114 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl282,003,974 - 82,106,745 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1278,756,902 - 78,858,094 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0279,773,947 - 79,876,973 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0280,842,557 - 80,943,172 (+)NCBIUU_Cfam_GSD_1.0
Fbxo42
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505837,913,546 - 37,994,035 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364743,738,234 - 3,818,842 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364743,738,332 - 3,818,796 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FBXO42
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl675,364,450 - 75,446,085 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1675,365,130 - 75,446,121 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2669,680,295 - 69,761,252 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FBXO42
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120115,971,342 - 116,056,150 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20115,971,369 - 116,059,285 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605419,454,277 - 19,554,377 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000015159   ⟹   ENSHGLP00000015009
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247642,368,251 - 2,466,298 (-)Ensembl
RefSeq Acc Id: XM_004850367   ⟹   XP_004850424
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247642,368,251 - 2,465,867 (-)NCBI
RefSeq Acc Id: XM_021262867   ⟹   XP_021118526
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247642,368,251 - 2,465,867 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004850424 (Get FASTA)   NCBI Sequence Viewer  
  XP_021118526 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB12009 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000015009
  ENSHGLP00000056942
  ENSHGLP00100047954
GenBank Protein JAO00195 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004850424   ⟸   XM_004850367
- UniProtKB: G5BRU7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021118526   ⟸   XM_021262867
- UniProtKB: G5BRU7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000015009   ⟸   ENSHGLT00000015159


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000010747 Ensembl, ENTREZGENE
  ENSHGLG00000048465 UniProtKB/TrEMBL
  ENSHGLG00100015876 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000015159 ENTREZGENE
  ENSHGLT00000050298 UniProtKB/TrEMBL
  ENSHGLT00100088258 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1280.50 UniProtKB/TrEMBL
  2.120.10.80 UniProtKB/TrEMBL
InterPro F-box-like_dom_sf UniProtKB/TrEMBL
  F-box_dom UniProtKB/TrEMBL
  Kelch-typ_b-propeller UniProtKB/TrEMBL
KEGG Report hgl:101716264 UniProtKB/TrEMBL
NCBI Gene Fbxo42 ENTREZGENE
PANTHER F-BOX ONLY PROTEIN 42 UniProtKB/TrEMBL
  F-BOX ONLY PROTEIN 42 UniProtKB/TrEMBL
Pfam F-box-like UniProtKB/TrEMBL
  Kelch_3 UniProtKB/TrEMBL
  Kelch_5 UniProtKB/TrEMBL
PROSITE FBOX UniProtKB/TrEMBL
SMART FBOX UniProtKB/TrEMBL
Superfamily-SCOP SSF117281 UniProtKB/TrEMBL
  SSF81383 UniProtKB/TrEMBL
UniProt G5BRU7 ENTREZGENE, UniProtKB/TrEMBL