Liat1 (ligand of ATE1) - Rat Genome Database

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Gene: Liat1 (ligand of ATE1) Heterocephalus glaber
Analyze
Symbol: Liat1
Name: ligand of ATE1
RGD ID: 18913107
Description: ENCODES a protein that exhibits molecular condensate scaffold activity (ortholog); INVOLVED IN non-membrane-bounded organelle assembly (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN nucleolus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chromosome unknown C17orf97 homolog; CUNH17orf97; protein LIAT1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247863,814,511 - 3,822,100 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleolus  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Liat1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247863,814,511 - 3,822,100 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
LIAT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3817410,325 - 414,666 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl17410,325 - 431,062 (+)EnsemblGRCh38hg38GRCh38
GRCh3717260,116 - 264,457 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3617260,434 - 264,713 (+)NCBINCBI36Build 36hg18NCBI36
Celera17361,212 - 365,198 (+)NCBICelera
Cytogenetic Map17p13.3NCBI
HuRef17271,792 - 276,131 (+)NCBIHuRef
CHM1_117269,061 - 273,400 (+)NCBICHM1_1
T2T-CHM13v2.017332,229 - 336,570 (+)NCBIT2T-CHM13v2.0
Liat1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391175,890,738 - 75,894,395 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1175,890,738 - 75,894,395 (+)EnsemblGRCm39 Ensembl
GRCm381175,999,912 - 76,003,569 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1175,999,912 - 76,003,569 (+)EnsemblGRCm38mm10GRCm38
MGSCv371175,813,414 - 75,817,071 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361175,816,168 - 75,819,764 (+)NCBIMGSCv36mm8
Celera1183,509,005 - 83,512,662 (+)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1145.92NCBI
Liat1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81061,370,698 - 61,374,438 (+)NCBIGRCr8
mRatBN7.21060,872,529 - 60,876,191 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1060,872,511 - 60,876,204 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1065,514,840 - 65,518,463 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01065,020,285 - 65,023,908 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01060,490,820 - 60,494,479 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01064,174,929 - 64,178,612 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1064,174,931 - 64,178,591 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01063,834,284 - 63,837,955 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41063,363,232 - 63,366,892 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1059,888,506 - 59,892,166 (+)NCBICelera
Cytogenetic Map10q24NCBI
Liat1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554812,079,002 - 2,083,141 (+)NCBIChiLan1.0ChiLan1.0
LIAT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2197,982,454 - 7,987,078 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1179,528,599 - 9,533,017 (+)NCBINHGRI_mPanPan1
LIAT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1945,246,971 - 45,250,052 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha944,397,038 - 44,400,105 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0946,065,282 - 46,068,348 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1944,843,933 - 44,846,999 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0945,137,128 - 45,140,192 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0945,216,168 - 45,219,199 (-)NCBIUU_Cfam_GSD_1.0
Liat1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560244,372,161 - 44,375,670 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365387,250,120 - 7,253,604 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LIAT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11247,327,086 - 47,330,139 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21249,503,175 - 49,506,237 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LIAT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.116244,921 - 250,073 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl16245,581 - 252,025 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605921,840,524 - 21,845,209 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_021238392   ⟹   XP_021094051
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247863,818,018 - 3,822,100 (-)NCBI
RefSeq Acc Id: XM_021238393   ⟹   XP_021094052
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247863,818,018 - 3,822,095 (-)NCBI
RefSeq Acc Id: XR_002386993
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247863,817,086 - 3,822,100 (-)NCBI
RefSeq Acc Id: XR_002386994
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247863,814,511 - 3,822,100 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021094051 (Get FASTA)   NCBI Sequence Viewer  
  XP_021094052 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB13362 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00100053209
Reference Protein Sequences
RefSeq Acc Id: XP_021094051   ⟸   XM_021238392
- Peptide Label: isoform X1
- UniProtKB: G5BVK9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021094052   ⟸   XM_021238393
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00100037285 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00100056996 UniProtKB/TrEMBL
InterPro LIAT1 UniProtKB/TrEMBL
NCBI Gene CUNH17orf97 ENTREZGENE
PANTHER PROTEIN LIAT1 UniProtKB/TrEMBL
  PTHR36474 UniProtKB/TrEMBL
UniProt G5BVK9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-03-07 Liat1  ligand of ATE1  CUNH17orf97  chromosome unknown C17orf97 homolog  Symbol and/or name change 5135510 APPROVED