Fut10 (fucosyltransferase 10) - Rat Genome Database

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Gene: Fut10 (fucosyltransferase 10) Heterocephalus glaber
Analyze
Symbol: Fut10
Name: fucosyltransferase 10
RGD ID: 18913020
Description: ENCODES a protein that exhibits fucosyltransferase activity (ortholog); INVOLVED IN cerebral cortex radially oriented cell migration (ortholog); N-glycan fucosylation (ortholog); neuroblast migration (ortholog); FOUND IN endoplasmic reticulum (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: alpha-(1,3)-fucosyltransferase 10
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478010,468,601 - 10,597,078 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478010,448,046 - 10,599,609 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Fut10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478010,468,601 - 10,597,078 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478010,448,046 - 10,599,609 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
FUT10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38833,308,061 - 33,473,146 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl833,370,824 - 33,473,146 (-)EnsemblGRCh38hg38GRCh38
GRCh37833,228,342 - 33,330,664 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36833,347,884 - 33,450,206 (-)NCBINCBI36Build 36hg18NCBI36
Build 34833,347,885 - 33,450,206NCBI
Celera832,177,762 - 32,280,374 (-)NCBICelera
Cytogenetic Map8p12NCBI
HuRef831,760,253 - 31,862,062 (-)NCBIHuRef
CHM1_1833,429,801 - 33,532,130 (-)NCBICHM1_1
T2T-CHM13v2.0833,578,178 - 33,744,498 (-)NCBIT2T-CHM13v2.0
Fut10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39831,677,342 - 31,757,310 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl831,677,359 - 31,751,766 (+)EnsemblGRCm39 Ensembl
GRCm38831,187,313 - 31,265,284 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl831,187,331 - 31,261,738 (+)EnsemblGRCm38mm10GRCm38
MGSCv37832,297,804 - 32,371,955 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36832,653,267 - 32,727,418 (+)NCBIMGSCv36mm8
Celera832,708,956 - 32,782,186 (+)NCBICelera
Cytogenetic Map8A3NCBI
cM Map818.1NCBI
Fut10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81667,571,828 - 67,661,814 (-)NCBIGRCr8
mRatBN7.21660,868,761 - 60,958,762 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1660,877,952 - 60,958,683 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1666,213,356 - 66,267,561 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01669,627,858 - 69,682,063 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01664,854,207 - 64,908,414 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01664,623,246 - 64,716,248 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1664,631,264 - 64,716,224 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01664,290,270 - 64,373,665 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.11664,849,444 - 64,855,465 (-)NCBI
Celera1658,902,644 - 58,956,153 (-)NCBICelera
Cytogenetic Map16q12.3NCBI
Fut10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554639,552,387 - 9,629,029 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554639,552,387 - 9,629,029 (-)NCBIChiLan1.0ChiLan1.0
FUT10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2751,945,077 - 52,049,092 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1827,661,767 - 27,764,708 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0832,685,110 - 32,788,502 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1829,872,097 - 29,974,524 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl829,872,097 - 29,974,524 (-)Ensemblpanpan1.1panPan2
FUT10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11631,186,333 - 31,265,463 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1631,186,418 - 31,264,963 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1631,719,786 - 31,790,046 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01633,213,318 - 33,293,238 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1633,213,751 - 33,294,857 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11631,318,158 - 31,388,497 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01631,897,315 - 31,967,157 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01631,936,119 - 32,006,196 (+)NCBIUU_Cfam_GSD_1.0
Fut10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494354,189,024 - 54,291,012 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936766449,468 - 550,884 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936766449,469 - 551,397 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FUT10
(Sus scrofa - pig)		 No map positions available.
FUT10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1831,325,224 - 31,560,369 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl831,450,567 - 31,551,152 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605210,493,935 - 10,608,672 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004855405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004855406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021236833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021236834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021236835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021236836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021236837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01058555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01058556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01058557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01058558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01058559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01058560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01058561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01058562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01058563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01058564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GEBF01001673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSHGLT00000004363   ⟹   ENSHGLP00000004303
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462478010,468,601 - 10,597,078 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000004364   ⟹   ENSHGLP00000004304
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462478010,476,636 - 10,540,177 (+)Ensembl
RefSeq Acc Id: XM_004855405   ⟹   XP_004855462
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478010,468,569 - 10,599,609 (+)NCBI
RefSeq Acc Id: XM_004855406   ⟹   XP_004855463
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478010,468,569 - 10,599,609 (+)NCBI
RefSeq Acc Id: XM_021236833   ⟹   XP_021092492
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478010,448,046 - 10,599,609 (+)NCBI
RefSeq Acc Id: XM_021236834   ⟹   XP_021092493
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478010,448,046 - 10,599,609 (+)NCBI
RefSeq Acc Id: XM_021236835   ⟹   XP_021092494
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478010,448,046 - 10,599,609 (+)NCBI
RefSeq Acc Id: XM_021236836   ⟹   XP_021092495
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478010,468,569 - 10,599,609 (+)NCBI
RefSeq Acc Id: XM_021236837   ⟹   XP_021092496
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478010,468,501 - 10,516,054 (+)NCBI
RefSeq Acc Id: XP_021092493   ⟸   XM_021236834
- Peptide Label: isoform X2
- UniProtKB: G5B9U5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021092492   ⟸   XM_021236833
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JEM0 (UniProtKB/TrEMBL),   G5B9U5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021092494   ⟸   XM_021236835
- Peptide Label: isoform X4
RefSeq Acc Id: XP_021092496   ⟸   XM_021236837
- Peptide Label: isoform X6
RefSeq Acc Id: XP_004855462   ⟸   XM_004855405
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JEM0 (UniProtKB/TrEMBL),   G5B9U5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021092495   ⟸   XM_021236836
- Peptide Label: isoform X5
RefSeq Acc Id: XP_004855463   ⟸   XM_004855406
- Peptide Label: isoform X3
- UniProtKB: G5B9U5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000004303   ⟸   ENSHGLT00000004363
Ensembl Acc Id: ENSHGLP00000004304   ⟸   ENSHGLT00000004364


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000003149 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000004363 ENTREZGENE
Gene3D-CATH 3.40.50.11660 UniProtKB/TrEMBL
InterPro Alpha-1_3-FUT_met UniProtKB/TrEMBL
  Glyco_tran_10_N UniProtKB/TrEMBL
  Glyco_trans_10 UniProtKB/TrEMBL
  GT10-like_C_sf UniProtKB/TrEMBL
NCBI Gene Fut10 ENTREZGENE
PANTHER ALPHA-(1,3)-FUCOSYLTRANSFERASE 10 UniProtKB/TrEMBL
  PTHR11929 UniProtKB/TrEMBL
Pfam Glyco_tran_10_N UniProtKB/TrEMBL
  Glyco_transf_10 UniProtKB/TrEMBL
PIRSF Alpha1_3FUT_met UniProtKB/TrEMBL
Superfamily-SCOP UDP-Glycosyltransferase/glycogen phosphorylase UniProtKB/TrEMBL
UniProt A0A0P6JEM0 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6PMD4_HETGA UniProtKB/TrEMBL
  A0AAX6R6J1_HETGA UniProtKB/TrEMBL
  A0AAX6R755_HETGA UniProtKB/TrEMBL
  A0AAX6R7Z5_HETGA UniProtKB/TrEMBL
  A0AAX6R9C0_HETGA UniProtKB/TrEMBL
  G5B9U5 ENTREZGENE, UniProtKB/TrEMBL