Sft2d3 (SFT2 domain containing 3) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Sft2d3 (SFT2 domain containing 3) Heterocephalus glaber
Analyze
Symbol: Sft2d3
Name: SFT2 domain containing 3
RGD ID: 18912874
Description: ASSOCIATED WITH autosomal dominant thrombophilia due to protein C deficiency (ortholog); genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: vesicle transport protein SFT2C
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473214,180,104 - 14,182,431 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Sft2d3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473214,180,104 - 14,182,431 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SFT2D3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382127,701,497 - 127,705,242 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2127,701,497 - 127,705,242 (+)EnsemblGRCh38hg38GRCh38
GRCh372128,459,071 - 128,462,816 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362128,175,067 - 128,177,877 (+)NCBINCBI36Build 36hg18NCBI36
Celera2121,769,540 - 121,772,350 (+)NCBICelera
Cytogenetic Map2q14.3NCBI
HuRef2120,764,831 - 120,767,641 (+)NCBIHuRef
CHM1_12128,463,204 - 128,466,014 (+)NCBICHM1_1
T2T-CHM13v2.02128,136,730 - 128,140,475 (+)NCBIT2T-CHM13v2.0
Sft2d3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391832,042,147 - 32,044,956 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1832,042,151 - 32,044,877 (-)EnsemblGRCm39 Ensembl
GRCm381831,909,094 - 31,911,903 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1831,909,098 - 31,911,824 (-)EnsemblGRCm38mm10GRCm38
MGSCv371832,068,748 - 32,071,557 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361832,051,554 - 32,054,929 (-)NCBIMGSCv36mm8
Celera1832,399,573 - 32,402,382 (-)NCBICelera
Cytogenetic Map18B1NCBI
cM Map1817.88NCBI
Sft2d3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81823,811,330 - 23,813,530 (-)NCBIGRCr8
mRatBN7.21823,537,105 - 23,539,305 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1823,537,105 - 23,539,305 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1823,665,205 - 23,667,405 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01824,414,263 - 24,416,463 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01823,760,172 - 23,762,372 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01824,691,281 - 24,693,481 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1824,691,281 - 24,693,481 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01824,405,574 - 24,407,774 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41824,330,540 - 24,332,740 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1823,289,516 - 23,291,716 (-)NCBICelera
Cytogenetic Map18p12NCBI
Sft2d3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554592,842,452 - 2,845,045 (-)NCBIChiLan1.0ChiLan1.0
SFT2D3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21347,941,774 - 47,943,308 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B47,956,754 - 47,958,264 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B32,571,859 - 32,575,164 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B128,366,981 - 128,368,958 (+)NCBIpanpan1.1PanPan1.1panPan2
SFT2D3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1923,154,967 - 23,155,638 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01924,233,560 - 24,234,231 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1924,233,560 - 24,234,210 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11922,937,456 - 22,938,127 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01923,132,305 - 23,132,976 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01924,263,583 - 24,264,254 (-)NCBIUU_Cfam_GSD_1.0
Sft2d3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530398,002,097 - 98,003,768 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493646943,613,952 - 43,615,855 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SFT2D3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1559,641,470 - 59,642,973 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11559,640,174 - 59,643,416 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21566,384,458 - 66,386,358 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SFT2D3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1102,513,298 - 2,516,884 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl102,514,945 - 2,515,589 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606120,244,157 - 20,246,476 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021266404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01006067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_021266404   ⟹   XP_021122063
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473214,180,104 - 14,182,431 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021122063 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021122063   ⟸   XM_021266404


Additional Information

Database Acc Id Source(s)
NCBI Gene Sft2d3 ENTREZGENE