Slain2 (SLAIN motif family member 2) - Rat Genome Database

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Gene: Slain2 (SLAIN motif family member 2) Heterocephalus glaber
Analyze
Symbol: Slain2
Name: SLAIN motif family member 2
RGD ID: 18912530
Description: INVOLVED IN cytoplasmic microtubule organization (ortholog); microtubule nucleation (ortholog); positive regulation of microtubule polymerization (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN centrosome (ortholog); cytosol (ortholog); microtubule cytoskeleton (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SLAIN motif-containing protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476118,548,163 - 18,635,567 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476118,551,399 - 18,635,337 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Slain2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476118,548,163 - 18,635,567 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476118,551,399 - 18,635,337 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SLAIN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38448,341,529 - 48,426,201 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl448,341,529 - 48,426,201 (+)EnsemblGRCh38hg38GRCh38
GRCh37448,343,546 - 48,428,218 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36448,038,370 - 48,122,972 (+)NCBINCBI36Build 36hg18NCBI36
Celera448,792,323 - 48,877,038 (+)NCBICelera
Cytogenetic Map4p11NCBI
HuRef447,663,993 - 47,748,480 (+)NCBIHuRef
CHM1_1448,342,753 - 48,427,384 (+)NCBICHM1_1
T2T-CHM13v2.0448,308,531 - 48,393,241 (+)NCBIT2T-CHM13v2.0
Slain2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39573,071,705 - 73,136,184 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl573,071,647 - 73,136,172 (+)EnsemblGRCm39 Ensembl
GRCm38572,914,362 - 72,978,841 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl572,914,304 - 72,978,829 (+)EnsemblGRCm38mm10GRCm38
MGSCv37573,305,556 - 73,370,067 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36573,227,698 - 73,257,960 (+)NCBIMGSCv36mm8
Celera570,166,358 - 70,231,895 (+)NCBICelera
Cytogenetic Map5C3.2NCBI
cM Map538.44NCBI
Slain2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81435,590,050 - 35,667,734 (-)NCBIGRCr8
mRatBN7.21435,236,034 - 35,314,186 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1435,236,041 - 35,304,678 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1435,600,041 - 35,669,002 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01436,904,799 - 36,973,765 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01435,393,130 - 35,462,108 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01437,802,347 - 37,880,571 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1437,802,365 - 37,871,051 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01437,612,566 - 37,690,486 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41437,639,681 - 37,708,306 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11437,642,112 - 37,710,742 (-)NCBI
Celera1434,490,942 - 34,559,588 (-)NCBICelera
Cytogenetic Map14p11NCBI
Slain2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955443131,696 - 231,866 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955443134,631 - 231,866 (-)NCBIChiLan1.0ChiLan1.0
SLAIN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2379,439,597 - 79,517,758 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1479,696,717 - 79,779,248 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0473,728,092 - 73,806,305 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1484,455,174 - 84,538,638 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl484,458,132 - 84,532,559 (-)Ensemblpanpan1.1panPan2
SLAIN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11344,172,232 - 44,249,088 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1344,172,232 - 44,246,650 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1344,124,594 - 44,201,588 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01344,773,096 - 44,852,416 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1344,772,933 - 44,851,978 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11344,449,333 - 44,526,331 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01343,982,227 - 44,061,705 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01344,864,748 - 44,941,779 (+)NCBIUU_Cfam_GSD_1.0
Slain2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528531,842,611 - 31,901,605 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648214,396,630 - 14,455,636 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648214,396,635 - 14,455,204 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLAIN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl838,241,598 - 38,322,031 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1838,241,497 - 38,320,663 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2840,289,036 - 40,365,756 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLAIN2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1271,831,126 - 1,910,851 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl271,829,963 - 1,910,447 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604747,834,546 - 47,912,473 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000027592   ⟹   ENSHGLP00000027350
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476118,548,163 - 18,635,567 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000027593   ⟹   ENSHGLP00000027351
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476118,548,163 - 18,635,567 (-)Ensembl
RefSeq Acc Id: XM_004849749   ⟹   XP_004849806
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476118,551,399 - 18,635,337 (-)NCBI
RefSeq Acc Id: XM_004849750   ⟹   XP_004849807
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476118,551,399 - 18,635,335 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004849806 (Get FASTA)   NCBI Sequence Viewer  
  XP_004849807 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000027350
  ENSHGLP00000027351
Reference Protein Sequences
RefSeq Acc Id: XP_004849806   ⟸   XM_004849749
- Peptide Label: isoform X1
RefSeq Acc Id: XP_004849807   ⟸   XM_004849750
- Peptide Label: isoform X2
RefSeq Acc Id: ENSHGLP00000027350   ⟸   ENSHGLT00000027592
RefSeq Acc Id: ENSHGLP00000027351   ⟸   ENSHGLT00000027593


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000019447 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000027592 ENTREZGENE
  ENSHGLT00000027593 ENTREZGENE
NCBI Gene Slain2 ENTREZGENE