Wipf2 (WAS/WASL interacting protein family member 2) - Rat Genome Database

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Gene: Wipf2 (WAS/WASL interacting protein family member 2) Heterocephalus glaber
Analyze
Symbol: Wipf2
Name: WAS/WASL interacting protein family member 2
RGD ID: 18912489
Description: ENCODES a protein that exhibits actin binding (inferred); ASSOCIATED WITH genetic disease (ortholog); hypertrophic cardiomyopathy 25 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: WAS/WASL-interacting protein family member 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247952,998,701 - 3,014,233 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247952,995,326 - 3,031,675 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Wipf2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247952,998,701 - 3,014,233 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247952,995,326 - 3,031,675 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
WIPF2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381740,219,304 - 40,284,136 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1740,219,304 - 40,284,136 (+)EnsemblGRCh38hg38GRCh38
GRCh371738,375,556 - 38,440,388 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361735,629,100 - 35,691,965 (+)NCBINCBI36Build 36hg18NCBI36
Celera1735,036,339 - 35,098,581 (+)NCBICelera
Cytogenetic Map17q21.2NCBI
HuRef1734,205,426 - 34,231,723 (+)NCBIHuRef
CHM1_11738,611,277 - 38,673,692 (+)NCBICHM1_1
T2T-CHM13v2.01741,083,198 - 41,147,631 (+)NCBIT2T-CHM13v2.0
Wipf2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391198,754,424 - 98,796,404 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1198,754,464 - 98,795,866 (+)EnsemblGRCm39 Ensembl
GRCm381198,863,598 - 98,905,578 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1198,863,638 - 98,905,040 (+)EnsemblGRCm38mm10GRCm38
MGSCv371198,724,912 - 98,766,892 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361198,679,899 - 98,719,610 (+)NCBIMGSCv36mm8
Celera11108,519,435 - 108,570,685 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1162.71NCBI
Wipf2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81084,317,305 - 84,357,862 (+)NCBIGRCr8
mRatBN7.21083,821,067 - 83,861,634 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1083,821,068 - 83,857,028 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1088,784,409 - 88,800,945 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01088,282,487 - 88,299,023 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01083,675,078 - 83,691,615 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01086,776,367 - 86,813,046 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1086,795,787 - 86,812,325 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01086,571,490 - 86,608,009 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41087,660,351 - 87,676,889 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1082,583,041 - 82,598,891 (+)NCBICelera
Cytogenetic Map10q31NCBI
Wipf2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545114,839,088 - 14,852,872 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545114,821,924 - 14,856,304 (+)NCBIChiLan1.0ChiLan1.0
WIPF2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21924,671,984 - 24,736,000 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11726,566,851 - 26,631,094 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01717,006,176 - 17,069,926 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11717,229,687 - 17,291,709 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1717,235,495 - 17,257,174 (-)Ensemblpanpan1.1panPan2
WIPF2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1922,320,321 - 22,372,907 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl922,325,183 - 22,364,545 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha921,792,592 - 21,845,177 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0923,112,823 - 23,165,676 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl923,113,635 - 23,165,623 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1921,886,912 - 21,939,496 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0922,145,632 - 22,198,224 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0922,270,563 - 22,323,166 (-)NCBIUU_Cfam_GSD_1.0
Wipf2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560221,718,490 - 21,768,325 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649015,306,670 - 15,353,952 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649015,306,817 - 15,355,469 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WIPF2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1222,119,979 - 22,164,626 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11222,119,134 - 22,164,641 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21222,582,180 - 22,619,610 (+)NCBISscrofa10.2Sscrofa10.2susScr3
WIPF2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11665,897,406 - 65,922,340 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1665,898,096 - 65,922,331 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607736,793,504 - 36,860,978 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000017905   ⟹   ENSHGLP00000017730
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247952,998,701 - 3,014,233 (-)Ensembl
RefSeq Acc Id: XM_021239885   ⟹   XP_021095544
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247952,995,326 - 3,031,675 (-)NCBI
RefSeq Acc Id: XM_021239886   ⟹   XP_021095545
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247952,995,326 - 3,031,675 (-)NCBI
RefSeq Acc Id: XM_021239887   ⟹   XP_021095546
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247952,995,326 - 3,031,301 (-)NCBI
RefSeq Acc Id: XM_021239888   ⟹   XP_021095547
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247952,995,326 - 3,031,675 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021095544 (Get FASTA)   NCBI Sequence Viewer  
  XP_021095545 (Get FASTA)   NCBI Sequence Viewer  
  XP_021095546 (Get FASTA)   NCBI Sequence Viewer  
  XP_021095547 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000017730
Reference Protein Sequences
RefSeq Acc Id: XP_021095547   ⟸   XM_021239888
- Peptide Label: isoform X2
- UniProtKB: G5BRV8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021095544   ⟸   XM_021239885
- Peptide Label: isoform X1
- UniProtKB: G5BRV8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021095545   ⟸   XM_021239886
- Peptide Label: isoform X1
- UniProtKB: G5BRV8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021095546   ⟸   XM_021239887
- Peptide Label: isoform X1
- UniProtKB: G5BRV8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000017730   ⟸   ENSHGLT00000017905


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000012679 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000017905 ENTREZGENE
InterPro WH2_dom UniProtKB/TrEMBL
NCBI Gene Wipf2 ENTREZGENE
Pfam WH2 UniProtKB/TrEMBL
PRINTS PRICHEXTENSN UniProtKB/TrEMBL
PROSITE WH2 UniProtKB/TrEMBL
SMART WH2 UniProtKB/TrEMBL
UniProt G5BRV8 ENTREZGENE, UniProtKB/TrEMBL