Ccnf (cyclin F) - Rat Genome Database

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Gene: Ccnf (cyclin F) Heterocephalus glaber
Analyze
Symbol: Ccnf
Name: cyclin F
RGD ID: 18912479
Description: ENCODES a protein that exhibits anaphase-promoting complex binding (ortholog); INVOLVED IN negative regulation of centrosome duplication (ortholog); placenta development (ortholog); protein ubiquitination (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); autosomal dominant nonsyndromic deafness 65 (ortholog); autosomal recessive nonsyndromic deafness 86 (ortholog); FOUND IN cell junction (ortholog); centriole (ortholog); SCF ubiquitin ligase complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cyclin-F
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624824181,735 - 204,029 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624824181,696 - 204,045 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ccnf
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624824181,735 - 204,029 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624824181,696 - 204,045 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CCNF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38162,429,447 - 2,458,854 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl162,429,394 - 2,458,854 (+)EnsemblGRCh38hg38GRCh38
GRCh37162,479,448 - 2,508,855 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36162,419,396 - 2,448,860 (+)NCBINCBI36Build 36hg18NCBI36
Build 34162,419,440 - 2,448,856NCBI
Celera162,693,713 - 2,723,233 (+)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef162,405,092 - 2,434,482 (+)NCBIHuRef
CHM1_1162,479,499 - 2,508,753 (+)NCBICHM1_1
T2T-CHM13v2.0162,451,862 - 2,480,982 (+)NCBIT2T-CHM13v2.0
Ccnf
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391724,441,518 - 24,470,333 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1724,441,172 - 24,470,458 (-)EnsemblGRCm39 Ensembl
GRCm381724,223,230 - 24,251,409 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1724,222,198 - 24,251,484 (-)EnsemblGRCm38mm10GRCm38
MGSCv371724,360,177 - 24,388,354 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361723,950,149 - 23,978,947 (-)NCBIMGSCv36mm8
Celera1724,728,662 - 24,756,723 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1712.32NCBI
Ccnf
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81013,757,884 - 13,783,669 (-)NCBIGRCr8
mRatBN7.21013,253,073 - 13,279,140 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1013,253,380 - 13,279,101 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1017,998,796 - 18,024,039 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01017,487,635 - 17,512,878 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01012,986,360 - 13,012,061 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01013,594,687 - 13,619,935 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1013,594,687 - 13,619,935 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01013,410,718 - 13,435,965 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41013,474,659 - 13,500,979 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11013,475,698 - 13,500,979 (-)NCBI
Celera1012,939,775 - 12,964,974 (-)NCBICelera
Cytogenetic Map10q12NCBI
Ccnf
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544214,865,954 - 14,890,709 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544214,864,935 - 14,890,802 (-)NCBIChiLan1.0ChiLan1.0
CCNF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2182,930,446 - 2,960,081 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1166,711,523 - 6,741,090 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0161,285,379 - 1,314,972 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1162,526,035 - 2,558,265 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl162,529,371 - 2,556,438 (+)Ensemblpanpan1.1panPan2
CCNF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1638,572,883 - 38,592,465 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl638,574,234 - 38,592,435 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha639,811,687 - 39,830,658 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0638,882,560 - 38,901,542 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl638,882,570 - 38,901,547 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1638,567,686 - 38,586,705 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0638,540,319 - 38,559,293 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0639,016,472 - 39,035,536 (-)NCBIUU_Cfam_GSD_1.0
Ccnf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344105,088,821 - 105,112,566 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366941,596,766 - 1,620,643 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366941,596,897 - 1,620,588 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCNF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl339,585,607 - 39,603,079 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1339,585,597 - 39,603,088 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2342,640,736 - 42,658,423 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCNF
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.152,302,249 - 2,336,188 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl52,302,341 - 2,335,270 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606828,701,622 - 28,738,252 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000021987   ⟹   ENSHGLP00000021777
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624824181,735 - 204,029 (+)Ensembl
RefSeq Acc Id: XM_004864645   ⟹   XP_004864702
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624824181,698 - 204,045 (+)NCBI
RefSeq Acc Id: XM_013065538   ⟹   XP_012920992
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624824181,696 - 204,045 (+)NCBI
RefSeq Acc Id: XM_021244421   ⟹   XP_021100080
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624824181,697 - 204,045 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004864702 (Get FASTA)   NCBI Sequence Viewer  
  XP_012920992 (Get FASTA)   NCBI Sequence Viewer  
  XP_021100080 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000021777
Reference Protein Sequences
RefSeq Acc Id: XP_012920992   ⟸   XM_013065538
- Peptide Label: isoform X2
- UniProtKB: G5AQD3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021100080   ⟸   XM_021244421
- Peptide Label: isoform X3
- UniProtKB: G5AQD3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004864702   ⟸   XM_004864645
- Peptide Label: isoform X1
- UniProtKB: G5AQD3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000021777   ⟸   ENSHGLT00000021987


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000015557 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000021987 ENTREZGENE
Gene3D-CATH Cyclin-like UniProtKB/TrEMBL
  Tetratricopeptide repeat domain UniProtKB/TrEMBL
InterPro Cyclin UniProtKB/TrEMBL
  Cyclin-like_dom UniProtKB/TrEMBL
  Cyclin-like_sf UniProtKB/TrEMBL
  Cyclin_C-dom UniProtKB/TrEMBL
  Cyclin_N UniProtKB/TrEMBL
  Cyclins_cyclin-box UniProtKB/TrEMBL
  TPR-like_helical_dom_sf UniProtKB/TrEMBL
NCBI Gene Ccnf ENTREZGENE
PANTHER CYCLIN-F UniProtKB/TrEMBL
  CYCLINS UniProtKB/TrEMBL
Pfam Cyclin_C UniProtKB/TrEMBL
  Cyclin_N UniProtKB/TrEMBL
PROSITE CYCLINS UniProtKB/TrEMBL
SMART CYCLIN UniProtKB/TrEMBL
  Cyclin_C UniProtKB/TrEMBL
Superfamily-SCOP Cyclin-like UniProtKB/TrEMBL
UniProt G5AQD3 ENTREZGENE, UniProtKB/TrEMBL