Marchf1 (membrane associated ring-CH-type finger 1) - Rat Genome Database

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Gene: Marchf1 (membrane associated ring-CH-type finger 1) Heterocephalus glaber
Analyze
Symbol: Marchf1
Name: membrane associated ring-CH-type finger 1
RGD ID: 18912462
Description: ENCODES a protein that exhibits ubiquitin-protein transferase activity (ortholog); INVOLVED IN antigen processing and presentation of peptide antigen via MHC class II (inferred); immune response (inferred); protein polyubiquitination (inferred); ASSOCIATED WITH COVID-19 (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); endosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: E3 ubiquitin-protein ligase MARCH1; March1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475812,878,810 - 13,319,814 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475812,528,242 - 13,321,851 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Marchf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475812,878,810 - 13,319,814 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475812,528,242 - 13,321,851 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
MARCHF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384163,524,298 - 164,384,019 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4163,524,298 - 164,384,050 (-)EnsemblGRCh38hg38GRCh38
GRCh374164,445,450 - 165,305,171 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364164,668,499 - 164,754,226 (-)NCBINCBI36Build 36hg18NCBI36
Build 344164,806,653 - 164,892,381NCBI
Celera4161,777,720 - 162,636,895 (-)NCBICelera
Cytogenetic Map4q32.2-q32.3NCBI
HuRef4160,199,325 - 161,058,221 (-)NCBIHuRef
CHM1_14164,421,900 - 165,280,873 (-)NCBICHM1_1
T2T-CHM13v2.04166,872,170 - 167,731,735 (-)NCBIT2T-CHM13v2.0
Marchf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39866,070,558 - 66,925,761 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl866,070,552 - 66,924,289 (+)EnsemblGRCm39 Ensembl
GRCm38865,618,009 - 66,472,841 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl865,617,900 - 66,471,637 (+)EnsemblGRCm38mm10GRCm38
MGSCv37868,141,939 - 68,995,536 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36868,547,514 - 69,399,416 (+)NCBIMGSCv36mm8
Celera868,174,462 - 69,027,711 (+)NCBICelera
Cytogenetic Map8B3.1NCBI
cM Map833.06NCBI
Marchf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81628,022,159 - 28,880,872 (-)NCBIGRCr8
mRatBN7.21623,255,551 - 24,114,290 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1623,258,799 - 24,114,277 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1626,618,960 - 27,482,348 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01630,053,672 - 30,917,036 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01625,992,293 - 26,875,346 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01624,998,709 - 25,856,327 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1625,001,666 - 25,192,675 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01624,882,375 - 25,407,999 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41624,971,361 - 25,496,590 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11624,971,358 - 25,055,466 (-)NCBI
Celera1623,375,326 - 23,888,905 (-)NCBICelera
Cytogenetic Map16p14-p13NCBI
Marchf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540341,060,246 - 41,484,734 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540341,187,039 - 41,484,734 (+)NCBIChiLan1.0ChiLan1.0
MARCHF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23161,340,439 - 162,192,916 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14161,702,902 - 162,551,136 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04155,791,599 - 156,639,456 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14167,579,850 - 168,692,736 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4167,583,874 - 168,153,648 (-)Ensemblpanpan1.1panPan2
MARCHF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11559,753,597 - 60,279,692 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1559,753,216 - 60,036,060 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1560,118,313 - 60,912,318 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01560,512,737 - 61,307,283 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1560,513,004 - 60,795,213 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11559,745,776 - 60,561,370 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01559,837,018 - 60,638,108 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01560,206,169 - 61,004,664 (-)NCBIUU_Cfam_GSD_1.0
Marchf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494316,472,621 - 17,186,316 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365551,610,268 - 2,097,985 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365551,810,896 - 2,097,870 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MARCHF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl852,375,514 - 52,951,033 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1852,375,510 - 52,951,031 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2855,502,841 - 55,523,454 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MARCHF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17109,978,620 - 110,783,623 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl7109,979,056 - 110,063,661 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603789,799,273 - 90,615,833 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004848232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021261212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021261213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01038534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01038535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01038536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01038537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01038538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01038539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01038540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01038541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01038542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01038543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01038544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01038545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01038546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01038547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01038548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01038549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01038550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01038551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01038552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01038553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01038554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01038555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01038556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01038557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GEBF01006384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSHGLT00000012475   ⟹   ENSHGLP00000012340
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475812,878,810 - 13,317,847 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000012476   ⟹   ENSHGLP00000012341
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475813,001,999 - 13,317,847 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000012477   ⟹   ENSHGLP00000012342
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475813,237,985 - 13,319,814 (+)Ensembl
RefSeq Acc Id: XM_004848232   ⟹   XP_004848289
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475812,528,247 - 13,321,851 (+)NCBI
RefSeq Acc Id: XM_021261212   ⟹   XP_021116871
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475812,528,417 - 13,321,851 (+)NCBI
RefSeq Acc Id: XM_021261213   ⟹   XP_021116872
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475812,528,242 - 13,321,851 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004848289 (Get FASTA)   NCBI Sequence Viewer  
  XP_021116871 (Get FASTA)   NCBI Sequence Viewer  
  XP_021116872 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000012340
  ENSHGLP00100058292
GenBank Protein JAN97248 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021116872   ⟸   XM_021261213
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004848289   ⟸   XM_004848232
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JA50 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021116871   ⟸   XM_021261212
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JA50 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000012341   ⟸   ENSHGLT00000012476
RefSeq Acc Id: ENSHGLP00000012342   ⟸   ENSHGLT00000012477
RefSeq Acc Id: ENSHGLP00000012340   ⟸   ENSHGLT00000012475


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000008819 Ensembl, ENTREZGENE
  ENSHGLG00100035451 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000012475 ENTREZGENE
  ENSHGLT00100075578 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
InterPro Znf_RING UniProtKB/TrEMBL
  Znf_RING-CH UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
KEGG Report hgl:101724772 UniProtKB/TrEMBL
NCBI Gene Marchf1 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCHF1 UniProtKB/TrEMBL
  LD02310P UniProtKB/TrEMBL
Pfam RINGv UniProtKB/TrEMBL
PROSITE ZF_RING_2 UniProtKB/TrEMBL
  ZF_RING_CH UniProtKB/TrEMBL
SMART RINGv UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
UniProt A0A0P6JA50 ENTREZGENE, UniProtKB/TrEMBL