Scg3 (secretogranin III) - Rat Genome Database

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Gene: Scg3 (secretogranin III) Heterocephalus glaber
Analyze
Symbol: Scg3
Name: secretogranin III
RGD ID: 18912250
Description: INVOLVED IN protein localization to secretory granule (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); developmental and epileptic encephalopathy 13 (ortholog); FOUND IN extracellular region (inferred); membrane (inferred); secretory granule membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Secretogranin-3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247318,650,631 - 8,681,923 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247318,652,648 - 8,681,905 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Scg3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247318,650,631 - 8,681,923 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247318,652,648 - 8,681,905 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SCG3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381551,681,503 - 51,721,026 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1551,681,492 - 51,721,026 (+)EnsemblGRCh38hg38GRCh38
GRCh371551,973,700 - 52,013,223 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361549,760,842 - 49,800,515 (+)NCBINCBI36Build 36hg18NCBI36
Build 341549,760,841 - 49,800,514NCBI
Celera1528,866,950 - 28,906,642 (+)NCBICelera
Cytogenetic Map15q21.2NCBI
HuRef1528,804,039 - 28,843,731 (+)NCBIHuRef
CHM1_11552,091,646 - 52,131,257 (+)NCBICHM1_1
T2T-CHM13v2.01549,488,960 - 49,528,517 (+)NCBIT2T-CHM13v2.0
Scg3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39975,550,648 - 75,591,733 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl975,550,471 - 75,591,338 (-)EnsemblGRCm39 Ensembl
GRCm38975,643,366 - 75,685,959 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl975,643,189 - 75,684,056 (-)EnsemblGRCm38mm10GRCm38
MGSCv37975,491,173 - 75,531,863 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36975,429,283 - 75,469,926 (-)NCBIMGSCv36mm8
Celera972,806,816 - 72,848,434 (-)NCBICelera
Cytogenetic Map9DNCBI
cM Map942.32NCBI
Scg3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8885,280,253 - 85,322,484 (-)NCBIGRCr8
mRatBN7.2876,399,777 - 76,442,015 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl876,399,777 - 76,442,015 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx881,907,241 - 81,955,800 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0880,172,086 - 80,214,605 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0878,006,582 - 78,055,133 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0882,582,352 - 82,641,536 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl882,582,352 - 82,641,536 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0882,183,497 - 82,242,336 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4880,467,921 - 80,514,192 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1880,495,390 - 80,533,246 (-)NCBI
Celera876,189,600 - 76,231,758 (-)NCBICelera
Cytogenetic Map8q24NCBI
Scg3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554092,875,017 - 2,907,363 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554092,876,355 - 2,907,363 (-)NCBIChiLan1.0ChiLan1.0
SCG3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21640,915,374 - 40,955,246 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11545,095,846 - 45,135,710 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01530,619,990 - 30,658,668 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11548,950,839 - 48,989,481 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1548,950,839 - 48,989,481 (+)Ensemblpanpan1.1panPan2
SCG3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13017,373,924 - 17,406,632 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3017,308,591 - 17,406,646 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3017,235,828 - 17,333,023 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03017,454,894 - 17,552,842 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3017,454,273 - 17,555,486 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13017,376,485 - 17,474,260 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03017,495,281 - 17,592,525 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03017,601,119 - 17,699,155 (+)NCBIUU_Cfam_GSD_1.0
Scg3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864095,666,009 - 95,704,416 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647113,514,073 - 13,555,139 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647113,514,072 - 13,552,250 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SCG3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1120,045,309 - 120,138,260 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11120,045,302 - 120,090,035 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21133,136,325 - 133,181,057 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SCG3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12631,655,789 - 31,693,585 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2631,654,094 - 31,693,535 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048109,520,872 - 109,560,174 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000027595   ⟹   ENSHGLP00000027353
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247318,650,631 - 8,681,923 (-)Ensembl
RefSeq Acc Id: XM_004835404   ⟹   XP_004835461
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247318,652,648 - 8,681,901 (-)NCBI
RefSeq Acc Id: XM_004835406   ⟹   XP_004835463
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247318,652,648 - 8,681,899 (-)NCBI
RefSeq Acc Id: XM_021261146   ⟹   XP_021116805
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247318,652,648 - 8,681,905 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004835461 (Get FASTA)   NCBI Sequence Viewer  
  XP_004835463 (Get FASTA)   NCBI Sequence Viewer  
  XP_021116805 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB18150 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000027353
GenBank Protein JAO03413 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021116805   ⟸   XM_021261146
- Peptide Label: isoform X2
- UniProtKB: G5C9D9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004835461   ⟸   XM_004835404
- Peptide Label: isoform X1
- UniProtKB: G5C9D9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004835463   ⟸   XM_004835406
- Peptide Label: isoform X3
- UniProtKB: G5C9D9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000027353   ⟸   ENSHGLT00000027595


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000019449 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000027595 ENTREZGENE
InterPro SCG3 UniProtKB/TrEMBL
NCBI Gene Scg3 ENTREZGENE
PANTHER PTHR17388 UniProtKB/TrEMBL
  SECRETOGRANIN-3 UniProtKB/TrEMBL
Pfam SGIII UniProtKB/TrEMBL
UniProt G5C9D9 ENTREZGENE, UniProtKB/TrEMBL