Camsap3 (calmodulin regulated spectrin associated protein family member 3) - Rat Genome Database

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Gene: Camsap3 (calmodulin regulated spectrin associated protein family member 3) Heterocephalus glaber
Analyze
Symbol: Camsap3
Name: calmodulin regulated spectrin associated protein family member 3
RGD ID: 18912131
Description: ENCODES a protein that exhibits actin filament binding (ortholog); microtubule minus-end binding (ortholog); INVOLVED IN cilium movement (ortholog); embryo development ending in birth or egg hatching (ortholog); epithelial cell-cell adhesion (ortholog); PARTICIPATES IN E-cadherin signaling pathway; ASSOCIATED WITH familial hemophagocytic lymphohistiocytosis 5 (ortholog); genetic disease (ortholog); mucolipidosis type IV (ortholog); FOUND IN axoneme (ortholog); centrosome (ortholog); ciliary basal body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Calmodulin-regulated spectrin-associated protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624828688,564 - 704,174 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624828689,010 - 703,496 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Camsap3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624828688,564 - 704,174 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624828689,010 - 703,496 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CAMSAP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38197,595,863 - 7,618,304 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl197,595,863 - 7,618,304 (+)EnsemblGRCh38hg38GRCh38
GRCh37197,660,749 - 7,683,190 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36197,566,788 - 7,589,196 (+)NCBINCBI36Build 36hg18NCBI36
Celera197,533,272 - 7,554,380 (+)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef197,306,514 - 7,352,872 (+)NCBIHuRef
CHM1_1197,660,679 - 7,682,947 (+)NCBICHM1_1
T2T-CHM13v2.0197,596,573 - 7,619,187 (+)NCBIT2T-CHM13v2.0
Camsap3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3983,637,237 - 3,659,075 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl83,637,293 - 3,659,075 (+)EnsemblGRCm39 Ensembl
GRCm3883,587,237 - 3,609,075 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl83,587,293 - 3,609,075 (+)EnsemblGRCm38mm10GRCm38
MGSCv3783,587,450 - 3,609,075 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3683,587,676 - 3,609,047 (+)NCBIMGSCv36mm8
Celera83,817,778 - 3,839,404 (+)NCBICelera
Cytogenetic Map8A1.1NCBI
cM Map81.92NCBI
Camsap3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8126,440,959 - 6,464,582 (+)NCBIGRCr8
mRatBN7.2121,643,062 - 1,666,685 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl121,643,251 - 1,666,685 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx122,308,318 - 2,333,214 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0122,931,892 - 2,956,786 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0121,703,844 - 1,727,718 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0122,133,935 - 2,157,403 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl122,134,022 - 2,157,403 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0124,296,348 - 4,319,735 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4122,546,678 - 2,572,951 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera123,498,429 - 3,522,426 (+)NCBICelera
Cytogenetic Map12p12NCBI
Camsap3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555631,639,600 - 1,648,818 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555631,639,369 - 1,648,826 (-)NCBIChiLan1.0ChiLan1.0
CAMSAP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22012,266,679 - 12,289,210 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11911,384,701 - 11,406,797 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0196,885,979 - 6,908,067 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1197,750,065 - 7,763,056 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl197,749,945 - 7,763,056 (+)Ensemblpanpan1.1panPan2
CAMSAP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12052,378,532 - 52,391,452 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2052,381,567 - 52,391,203 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2052,180,476 - 52,195,531 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02052,905,774 - 52,920,755 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2052,904,621 - 52,920,506 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12052,109,506 - 52,124,555 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02052,553,047 - 52,568,099 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02052,784,101 - 52,799,040 (+)NCBIUU_Cfam_GSD_1.0
Camsap3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118213,164,947 - 213,179,472 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365884,655,311 - 4,669,532 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365884,660,664 - 4,669,836 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CAMSAP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl271,531,614 - 71,547,419 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1271,531,607 - 71,547,413 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2271,891,789 - 71,901,026 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CAMSAP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.167,085,113 - 7,104,133 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl67,085,282 - 7,103,885 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666081757,339 - 778,118 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000009720   ⟹   ENSHGLP00000009613
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624828688,564 - 704,174 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000009721   ⟹   ENSHGLP00000009614
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624828688,564 - 704,174 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000009722   ⟹   ENSHGLP00000009615
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624828689,010 - 703,245 (+)Ensembl
RefSeq Acc Id: XM_004865339   ⟹   XP_004865396
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624828689,010 - 703,496 (+)NCBI
RefSeq Acc Id: XM_004865340   ⟹   XP_004865397
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624828689,010 - 703,496 (+)NCBI
RefSeq Acc Id: XM_004865341   ⟹   XP_004865398
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624828689,010 - 703,496 (+)NCBI
RefSeq Acc Id: XM_004865342   ⟹   XP_004865399
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624828689,010 - 703,245 (+)NCBI
RefSeq Acc Id: XM_004865344   ⟹   XP_004865401
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624828692,799 - 703,496 (+)NCBI
RefSeq Acc Id: XM_021245192   ⟹   XP_021100851
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624828692,800 - 703,496 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_004865396   ⟸   XM_004865339
- Peptide Label: isoform X1
RefSeq Acc Id: XP_004865398   ⟸   XM_004865341
- Peptide Label: isoform X3
RefSeq Acc Id: XP_004865397   ⟸   XM_004865340
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004865399   ⟸   XM_004865342
- Peptide Label: isoform X4
RefSeq Acc Id: XP_004865401   ⟸   XM_004865344
- Peptide Label: isoform X5
RefSeq Acc Id: XP_021100851   ⟸   XM_021245192
- Peptide Label: isoform X6
RefSeq Acc Id: ENSHGLP00000009615   ⟸   ENSHGLT00000009722
RefSeq Acc Id: ENSHGLP00000009613   ⟸   ENSHGLT00000009720
RefSeq Acc Id: ENSHGLP00000009614   ⟸   ENSHGLT00000009721


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000006897 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000009720 ENTREZGENE
  ENSHGLT00000009721 ENTREZGENE
  ENSHGLT00000009722 ENTREZGENE
NCBI Gene Camsap3 ENTREZGENE