Megf6 (multiple EGF like domains 6) - Rat Genome Database

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Gene: Megf6 (multiple EGF like domains 6) Heterocephalus glaber
Analyze
Symbol: Megf6
Name: multiple EGF like domains 6
RGD ID: 18912013
Description: ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); Ehlers-Danlos syndrome spondylodysplastic type 2 (ortholog); genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: multiple epidermal growth factor-like domains protein 6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248186,867,706 - 6,945,383 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Megf6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248186,867,706 - 6,945,383 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
MEGF6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3813,487,951 - 3,624,786 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl13,487,951 - 3,611,508 (-)EnsemblGRCh38hg38GRCh38
GRCh3713,404,515 - 3,528,072 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3613,394,366 - 3,517,919 (-)NCBINCBI36Build 36hg18NCBI36
Build 3413,429,640 - 3,471,169NCBI
Celera12,657,546 - 2,783,180 (-)NCBICelera
Cytogenetic Map1p36.32NCBI
HuRef12,699,245 - 2,824,471 (-)NCBIHuRef
CHM1_113,391,530 - 3,514,788 (-)NCBICHM1_1
T2T-CHM13v2.012,994,964 - 3,134,506 (-)NCBIT2T-CHM13v2.0
Megf6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394154,255,156 - 154,360,178 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4154,255,187 - 154,360,170 (+)EnsemblGRCm39 Ensembl
GRCm384154,170,704 - 154,275,721 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4154,170,730 - 154,275,713 (+)EnsemblGRCm38mm10GRCm38
MGSCv374153,544,822 - 153,649,830 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364153,014,513 - 153,119,521 (+)NCBIMGSCv36mm8
Celera4156,454,674 - 156,563,044 (+)NCBICelera
Cytogenetic Map4E2NCBI
cM Map483.89NCBI
Megf6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85170,020,699 - 170,121,557 (+)NCBIGRCr8
mRatBN7.25164,738,272 - 164,839,142 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5164,738,352 - 164,839,139 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5167,442,460 - 167,543,339 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05169,263,873 - 169,364,753 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05169,226,389 - 169,327,272 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05171,588,901 - 171,620,947 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5171,472,273 - 171,620,947 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05175,061,318 - 175,092,801 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45171,022,566 - 171,050,436 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5162,949,005 - 163,049,274 (+)NCBICelera
Cytogenetic Map5q36NCBI
Megf6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554868,029,200 - 8,102,876 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554868,029,200 - 8,103,395 (+)NCBIChiLan1.0ChiLan1.0
LOC100975124
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21224,697,347 - 224,825,216 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11223,342,714 - 223,470,778 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012,155,295 - 2,283,034 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.113,283,100 - 3,405,920 (-)NCBIpanpan1.1PanPan1.1panPan2
MEGF6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1558,058,833 - 58,145,855 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl558,059,031 - 58,146,193 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha558,069,548 - 58,159,767 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0558,260,038 - 58,346,898 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl558,260,236 - 58,347,762 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1558,274,617 - 58,361,420 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0558,143,351 - 58,230,183 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0558,533,553 - 58,620,411 (-)NCBIUU_Cfam_GSD_1.0
Megf6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505829,101,134 - 29,196,271 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936737269,629 - 364,809 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MEGF6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl665,053,389 - 65,141,380 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1665,055,533 - 65,141,449 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2659,798,036 - 59,826,365 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103225737
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120128,075,329 - 128,195,618 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605432,339,756 - 32,476,481 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_013065065   ⟹   XP_012920519
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248186,867,706 - 6,945,383 (+)NCBI
Protein Sequences
Protein RefSeqs XP_012920519 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_012920519   ⟸   XM_013065065


Additional Information

Database Acc Id Source(s)
NCBI Gene Megf6 ENTREZGENE