Rbm11 (RNA binding motif protein 11) - Rat Genome Database

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Gene: Rbm11 (RNA binding motif protein 11) Heterocephalus glaber
Analyze
Symbol: Rbm11
Name: RNA binding motif protein 11
RGD ID: 18911985
Description: ENCODES a protein that exhibits poly(U) RNA binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN cellular response to oxidative stress (ortholog); regulation of alternative mRNA splicing, via spliceosome (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN nuclear speck (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: splicing regulator RBM11
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247452,685,372 - 2,697,518 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247452,685,445 - 2,696,791 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nuclear speck  (ISO)
nucleoplasm  (ISO)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Rbm11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247452,685,372 - 2,697,518 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247452,685,445 - 2,696,791 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
RBM11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382114,216,157 - 14,228,372 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2114,216,130 - 14,228,372 (+)EnsemblGRCh38hg38GRCh38
GRCh372115,588,478 - 15,600,693 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362114,510,350 - 14,522,552 (+)NCBINCBI36Build 36hg18NCBI36
Build 342114,510,349 - 14,522,552NCBI
Celera21745,717 - 757,944 (+)NCBICelera
Cytogenetic Map21q11.2NCBI
HuRef21958,833 - 971,058 (+)NCBIHuRef
CHM1_12115,148,999 - 15,161,227 (+)NCBICHM1_1
T2T-CHM13v2.02112,558,865 - 12,571,078 (+)NCBIT2T-CHM13v2.0
Rbm11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391675,389,796 - 75,399,706 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1675,389,732 - 75,399,717 (+)EnsemblGRCm39 Ensembl
GRCm381675,592,844 - 75,602,825 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1675,592,844 - 75,602,829 (+)EnsemblGRCm38mm10GRCm38
MGSCv371675,593,136 - 75,603,070 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361675,475,524 - 75,484,382 (+)NCBIMGSCv36mm8
Celera1675,829,936 - 75,839,869 (+)NCBICelera
Cytogenetic Map16C3.1NCBI
cM Map1643.22NCBI
Rbm11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81127,721,870 - 27,731,125 (+)NCBIGRCr8
mRatBN7.21114,234,851 - 14,244,092 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1114,234,890 - 14,244,090 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1122,859,949 - 22,869,159 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01115,586,333 - 15,595,543 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01114,754,201 - 14,763,411 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01114,005,704 - 14,015,723 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1114,005,732 - 14,014,962 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01117,664,383 - 17,674,391 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41114,381,923 - 14,391,904 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11114,379,374 - 14,390,086 (+)NCBI
Celera1114,248,500 - 14,258,481 (+)NCBICelera
Cytogenetic Map11p11NCBI
Rbm11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540716,071,208 - 16,081,949 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540716,071,186 - 16,082,332 (+)NCBIChiLan1.0ChiLan1.0
RBM11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22210,693,134 - 10,705,375 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1215,526,875 - 5,538,726 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v021942,533 - 954,775 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12114,309,922 - 14,322,142 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2114,309,883 - 14,322,142 (+)Ensemblpanpan1.1panPan2
RBM11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13111,204,273 - 11,217,526 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3111,203,207 - 11,217,509 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3111,215,073 - 11,228,492 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03111,228,501 - 11,241,994 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3111,228,404 - 11,241,994 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13111,201,584 - 11,215,096 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03111,239,110 - 11,252,365 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03111,635,470 - 11,648,982 (+)NCBIUU_Cfam_GSD_1.0
Rbm11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497112,327,134 - 12,337,002 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365057,246,844 - 7,256,790 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365057,246,854 - 7,256,763 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBM11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13179,180,467 - 179,191,924 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113179,180,611 - 179,191,934 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213189,369,722 - 189,381,248 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RBM11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1278,390,304 - 78,395,739 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605075,603,734 - 75,618,143 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004842199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01024443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000019670   ⟹   ENSHGLP00000019477
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247452,685,372 - 2,697,518 (+)Ensembl
RefSeq Acc Id: XM_004842199   ⟹   XP_004842256
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247452,685,445 - 2,696,791 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004842256 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000019477
Reference Protein Sequences
RefSeq Acc Id: XP_004842256   ⟸   XM_004842199
- UniProtKB: G5B4Q3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000019477   ⟸   ENSHGLT00000019670


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000013951 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000019670 ENTREZGENE
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RBM11_RRM UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
NCBI Gene Rbm11 ENTREZGENE
PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED UniProtKB/TrEMBL
  SPLICING REGULATOR RBM11 UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP RNA-binding domain, RBD UniProtKB/TrEMBL
UniProt G5B4Q3 ENTREZGENE, UniProtKB/TrEMBL