Celsr2 (cadherin EGF LAG seven-pass G-type receptor 2) - Rat Genome Database

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Gene: Celsr2 (cadherin EGF LAG seven-pass G-type receptor 2) Heterocephalus glaber
Analyze
Symbol: Celsr2
Name: cadherin EGF LAG seven-pass G-type receptor 2
RGD ID: 18911872
Description: ENCODES a protein that exhibits calcium ion binding (inferred); G protein-coupled receptor activity (inferred); INVOLVED IN cerebrospinal fluid secretion (ortholog); cilium assembly (ortholog); cilium movement (ortholog); ASSOCIATED WITH autistic disorder (ortholog); coronary artery disease (ortholog); Developmental Disabilities (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247724,990,178 - 5,014,119 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247724,990,185 - 5,014,008 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Celsr2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247724,990,178 - 5,014,119 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247724,990,185 - 5,014,008 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CELSR2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381109,249,539 - 109,275,751 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1109,249,539 - 109,275,751 (+)EnsemblGRCh38hg38GRCh38
GRCh371109,792,161 - 109,818,373 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361109,594,164 - 109,619,901 (+)NCBINCBI36Build 36hg18NCBI36
Build 341109,504,682 - 109,530,414NCBI
Celera1108,062,003 - 108,087,743 (+)NCBICelera
Cytogenetic Map1p13.3NCBI
HuRef1107,685,865 - 107,711,622 (+)NCBIHuRef
CHM1_11109,907,493 - 109,933,231 (+)NCBICHM1_1
T2T-CHM13v2.01109,282,346 - 109,308,548 (+)NCBIT2T-CHM13v2.0
Celsr2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393108,298,164 - 108,323,416 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3108,298,167 - 108,323,383 (-)EnsemblGRCm39 Ensembl
GRCm383108,390,848 - 108,416,069 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3108,390,851 - 108,415,552 (-)EnsemblGRCm38mm10GRCm38
MGSCv373108,193,766 - 108,218,412 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363108,520,500 - 108,543,550 (-)NCBIMGSCv36mm8
Celera3110,725,058 - 110,749,705 (-)NCBICelera
Cytogenetic Map3F3NCBI
cM Map347.02NCBI
Celsr2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82198,717,333 - 198,741,689 (-)NCBIGRCr8
mRatBN7.22196,029,206 - 196,053,848 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2196,029,434 - 196,053,845 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2203,673,871 - 203,696,491 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02201,555,989 - 201,578,609 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02196,372,945 - 196,395,565 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02211,183,410 - 211,207,458 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2211,183,311 - 211,207,465 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02230,653,341 - 230,677,459 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42203,960,513 - 203,983,133 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12203,923,277 - 203,943,562 (-)NCBI
Celera2188,676,929 - 188,699,559 (-)NCBICelera
Cytogenetic Map2q34NCBI
Celsr2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543512,671,759 - 12,695,564 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543512,671,759 - 12,695,070 (+)NCBIChiLan1.0ChiLan1.0
CELSR2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21118,028,278 - 118,054,493 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11117,188,189 - 117,214,398 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01111,627,551 - 111,653,775 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11110,791,720 - 110,817,125 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1110,791,682 - 110,815,421 (+)Ensemblpanpan1.1panPan2
CELSR2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1642,547,638 - 42,573,407 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl642,548,983 - 42,573,962 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha645,322,198 - 45,348,111 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0642,878,783 - 42,904,743 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl642,879,935 - 42,904,724 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1642,610,137 - 42,636,081 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0642,568,221 - 42,594,142 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0643,003,504 - 43,029,464 (-)NCBIUU_Cfam_GSD_1.0
Celsr2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505819,310,286 - 19,334,616 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936704778,480 - 803,886 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936704779,528 - 803,860 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CELSR2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4110,819,428 - 110,845,132 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14110,819,422 - 110,845,354 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24121,290,848 - 121,295,430 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CELSR2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12024,270,963 - 24,296,263 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2024,270,952 - 24,296,647 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603834,162,262 - 34,190,697 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000012804   ⟹   ENSHGLP00000012667
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247724,990,178 - 5,014,119 (+)Ensembl
RefSeq Acc Id: XM_004853622   ⟹   XP_004853679
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247724,990,185 - 5,014,008 (+)NCBI
RefSeq Acc Id: XM_013075541   ⟹   XP_012930995
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247724,990,185 - 5,014,008 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004853679 (Get FASTA)   NCBI Sequence Viewer  
  XP_012930995 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000012667
RefSeq Acc Id: XP_004853679   ⟸   XM_004853622
- Peptide Label: isoform X1
- UniProtKB: G5BQV8 (UniProtKB/TrEMBL),   A0AAX6PKJ5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012930995   ⟸   XM_013075541
- Peptide Label: isoform X2
- UniProtKB: G5BQV8 (UniProtKB/TrEMBL),   A0AAX6R0H3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000012667   ⟸   ENSHGLT00000012804


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000009055 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000012804 ENTREZGENE
Gene3D-CATH 1.25.40.610 UniProtKB/TrEMBL
  2.60.120.200 UniProtKB/TrEMBL
  2.60.220.50 UniProtKB/TrEMBL
  Cadherins UniProtKB/TrEMBL
  GPCR, family 2, extracellular hormone receptor domain UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
  Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro Cadherin-like_dom UniProtKB/TrEMBL
  Cadherin-like_sf UniProtKB/TrEMBL
  Cadherin_CS UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/TrEMBL
  EGF-like_Ca-bd_dom UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  EGF-type_Asp/Asn_hydroxyl_site UniProtKB/TrEMBL
  GAIN_dom_N UniProtKB/TrEMBL
  GAIN_dom_sf UniProtKB/TrEMBL
  GPCR_2-like_TM UniProtKB/TrEMBL
  GPCR_2_extracell_dom_sf UniProtKB/TrEMBL
  GPCR_2_extracellular_dom UniProtKB/TrEMBL
  GPCR_2_secretin-like UniProtKB/TrEMBL
  GPS UniProtKB/TrEMBL
  Growth_fac_rcpt_cys_sf UniProtKB/TrEMBL
  Laminin_G UniProtKB/TrEMBL
  LE_dom UniProtKB/TrEMBL
NCBI Gene Celsr2 ENTREZGENE
PANTHER CADHERIN EGF LAG SEVEN-PASS G-TYPE RECEPTOR 2 UniProtKB/TrEMBL
  FAT ATYPICAL CADHERIN-RELATED UniProtKB/TrEMBL
Pfam 7tm_2 UniProtKB/TrEMBL
  Cadherin UniProtKB/TrEMBL
  EGF UniProtKB/TrEMBL
  GAIN UniProtKB/TrEMBL
  GPS UniProtKB/TrEMBL
  HRM UniProtKB/TrEMBL
  Laminin_EGF UniProtKB/TrEMBL
  Laminin_G_2 UniProtKB/TrEMBL
PRINTS CADHERIN UniProtKB/TrEMBL
  GPCRSECRETIN UniProtKB/TrEMBL
PROSITE ASX_HYDROXYL UniProtKB/TrEMBL
  CADHERIN_1 UniProtKB/TrEMBL
  CADHERIN_2 UniProtKB/TrEMBL
  EGF_1 UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  EGF_LAM_1 UniProtKB/TrEMBL
  EGF_LAM_2 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F2_3 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F2_4 UniProtKB/TrEMBL
  GPS UniProtKB/TrEMBL
  LAM_G_DOMAIN UniProtKB/TrEMBL
SMART EGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  EGF_Lam UniProtKB/TrEMBL
  GPS UniProtKB/TrEMBL
  HormR UniProtKB/TrEMBL
  LamG UniProtKB/TrEMBL
  SM00112 UniProtKB/TrEMBL
Superfamily-SCOP Cadherin-like UniProtKB/TrEMBL
  Concanavalin A-like lectins/glucanases UniProtKB/TrEMBL
  EGF/Laminin UniProtKB/TrEMBL
  Growth factor receptor domain UniProtKB/TrEMBL
UniProt A0AAX6PKJ5 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6R0H3 ENTREZGENE, UniProtKB/TrEMBL
  G5BQV8 ENTREZGENE, UniProtKB/TrEMBL